Pairwise Alignments

Query, 597 a.a., surface saccharide ABC transporter ATP-binding/membrane spanning protein from Sinorhizobium meliloti 1021

Subject, 599 a.a., ABC transporter, ATP-binding protein MsbA (RefSeq) from Shewanella amazonensis SB2B

 Score =  207 bits (527), Expect = 1e-57
 Identities = 167/571 (29%), Positives = 277/571 (48%), Gaps = 26/571 (4%)

Query: 12  LRGALGRQMRLLPAVVILGLASAALEGAGIGLIIPMLGIIAGDGQANGLSGISAYFQAIG 71
           L G L     +    VI  L   A++   I  I P +     D   +G+    +      
Sbjct: 16  LMGYLKPMKSIFIVSVIALLVYGAVDATFIAFIQPFI-----DKGFSGVGMSGSVNMGTT 70

Query: 72  EGLGDGERLLVIAA-AVLALIVLKNILAFANTLLTTFIYGKASHAIRSALSDQLLRIGYP 130
            G   G  +L  A   V+ L  L+ +  F +T   +++  K    +R  + +  L +   
Sbjct: 71  SGFDSGNSVLFWAPFVVVGLFTLRGLANFVSTYGISYMSAKLIMDMRQQVFEHYLTLPVS 130

Query: 131 FFMQQSPGRLLNIISNESWRASDAIQTVLSSIVHGSAAVI-LLAFLLLMSWQMTLFVALG 189
           +  +++ G L++ ++ ++ + + A  + L SIV     VI +L  +   SW+++L + + 
Sbjct: 131 YIDKENSGNLISRVTFDTEQIARASGSALISIVRDGVTVIGMLGLMFYNSWKLSLCILIV 190

Query: 190 LVFVQLAHAALSATLKGPSRHVTSFNSELAARMLHLVHAGRLIRVFGQETREKNAFDSAS 249
              + L  A +S   +  SR + S    + A    ++   + +  FG +  E   F   +
Sbjct: 191 GPIIGLVIATVSRRFRKISRQIQSAMGGVTAVTEQMIKGHKNVLAFGGQETEAKRFAQVN 250

Query: 250 DAVRRAGFALQSRQGALPPLTEVLHSALFLAVVVSAWSIGV--------SFPVIVAFVVL 301
           D  R     L   Q    P   ++ S   LA V+ A S           +F  ++A   +
Sbjct: 251 DHNRHQNMKLAVAQAISQPTIMIIGS-FALAFVLYAASFDALKSELTAGTFATVLA--AM 307

Query: 302 LYRLQPHMRALQMSWSQIQGWSGSLEEVRWLLDSSDKPKAPQGNAPVDGLHQGMTFDRVT 361
           +  LQP     +++ ++ Q    +   V  LLD+    +  +G    + +   + F++V 
Sbjct: 308 MATLQPIKNLTRVN-AEFQRGIAACTTVFELLDTP--AEHDKGTFETERVKGHVRFEQVA 364

Query: 362 FRYPGSEVRPLVLHSASFEIRSGRSTAIIGRSGAGKTTIVNLLCRFVEP-DEGRILVDGV 420
           FRY G E R   L   SF++  G++ A++GRSG+GK+TI +L+ RF    ++G I +DGV
Sbjct: 365 FRYEGQEGR--ALDGISFDVPPGKTLALVGRSGSGKSTIASLINRFYGGLEQGAIELDGV 422

Query: 421 PLGQINPVQWRRQIAVASQDLELVDGTILENITYG--QSATPAEAERAAKLAEAHGFIEQ 478
            +        R Q+A+ SQ + L + TI  NI Y    + T  + E+AA LA A  FI +
Sbjct: 423 NVEDYRLKNLRSQVALVSQQVTLFNDTIANNIAYACPWAVTREQIEQAATLAHAMEFISK 482

Query: 479 LPQGYETLVGYRGASLSAGQRQRIALARALVRDPAILILDEATNAVDGLSEAAIVETLRS 538
           LP G +T VG  G  LS GQRQRIA+ARA++R+  +LILDEAT+A+D  SE AI E L +
Sbjct: 483 LPSGLDTQVGENGVLLSGGQRQRIAIARAMLRNAPVLILDEATSALDTESEKAIQEGLEN 542

Query: 539 RAGRRTTIVISHHRSTISFCDDVVVLGSGRV 569
               RT+IVI+H  STI   D+++V+  GR+
Sbjct: 543 LRQNRTSIVIAHRLSTIESADEILVIEQGRI 573