Pairwise Alignments

Query, 394 a.a., integral membrane transporter protein from Sinorhizobium meliloti 1021

Subject, 386 a.a., Arabinose efflux permease from Pseudomonas fluorescens FW300-N2E2

 Score =  203 bits (516), Expect = 8e-57
 Identities = 134/394 (34%), Positives = 205/394 (52%), Gaps = 10/394 (2%)

Query: 1   MDKRIIWLAVGSFTMSTVGFVFSSLLPSIAADTHTTIPRSGHLITLFSLSYAIGAPLLSA 60
           M   ++ LAV +F + T  FV   LLP +A D   +IP++G LIT ++L    GAP+L+ 
Sbjct: 1   MPLALLALAVAAFGIGTTEFVIMGLLPDVARDLAVSIPQAGLLITGYALGVVFGAPILAI 60

Query: 61  LAGAADRRRLLVTAMLVFVVGNCIAAMSVSFTTLLLAQIVMGMASGLFAATAQAAAVSLA 120
                 R+  L+   L+F++GN + A++ ++ TL+ A+++  +  G F       A  L 
Sbjct: 61  GTANMPRKATLLGMTLMFILGNVLCALAPNYATLMAARVITALCHGAFFGIGSVVAAGLV 120

Query: 121 GPEHRALAISIVVGGTTFAVALGAPLGALIAAFWGWRGTFGAVALLGLTCAAVLWLRLPR 180
            P  RA AI+++  G T A  LG PLG  +  + GWR TF AV+++G+  A   W+ LP+
Sbjct: 121 APNKRAQAIAMMFTGLTLANVLGVPLGTALGQYAGWRSTFWAVSVIGVIAAIAQWVWLPK 180

Query: 181 GLSGTKLTMSERFGAIGRPGVASSLMVTFLYLTGGFMIISYLAPLAIDGAGLSQLALPGL 240
            +   K  ++  F  +G+  V  +L ++ L  T  F + +Y+AP+  D  G+S   +  +
Sbjct: 181 DIPMDKANLASEFKVLGKANVLLALGMSVLASTSLFSVFTYIAPILQDITGVSPHGITVM 240

Query: 241 LLAFGVGAVIGNLSSGYLADRLGATRVVTASLISALAVSLMIAFGLHFLTRDLAGLLLIG 300
           LL FGVG   G+   G LADR    R++ + +  ALAV L++A    F     + +    
Sbjct: 241 LLLFGVGLTAGSFLGGRLADR----RLLPSLVGMALAVVLVLA---AFSQTSQSVIPAAI 293

Query: 301 IMVPWGIVGWAFPPAQASRIVGFAPEVAHLTLSLNASAIYLGIATGTAIGGRVLENTA-A 359
            +V WGI  +A  P     I+  A E  +L  +LN SA  LG A G  IGG V+ + A  
Sbjct: 294 TLVLWGIFAFALCPILQLLIIDQAFEAPNLGSTLNQSAFNLGNAAGAWIGGLVVASGADL 353

Query: 360 ADLGFFAALFPVASLAVLYAGLRSHRRRLATAAA 393
           ADL +  A   V  L VL A    HR+R   A A
Sbjct: 354 ADLPWTGA--AVGGLTVLTALFFIHRQRRLAAVA 385