Pairwise Alignments

Query, 453 a.a., reverse transcriptasematurase from Sinorhizobium meliloti 1021

Subject, 567 a.a., Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) from Pseudomonas fluorescens FW300-N2E2

 Score =  134 bits (338), Expect = 6e-36
 Identities = 118/391 (30%), Positives = 190/391 (48%), Gaps = 46/391 (11%)

Query: 46  LEAALARENLQR--AWKRVKANKGAAGADGLSIEATAAHLRTSW--PDIRERVLAGT--- 98
           L+  L R    R  A +RV  N+G         + TA   R  W  PD + +   G    
Sbjct: 53  LQRMLTRSRSARYLAVRRVTENQG---------KRTAGVDRVLWDTPDAKWKAANGLKRH 103

Query: 99  -YRPMPVRRVTIPKPDGGERELGIPTVTDRLIQQALLQVLQPLLDPAFSEHSHGFRPGRS 157
            Y+P P+RRV IPK +G ER LGIPT+TDR +Q   L  L P+ +     +S+GFR  RS
Sbjct: 104 GYKPRPLRRVFIPKSNGKERPLGIPTMTDRAMQALYLLALAPIAETTGDPNSYGFRIERS 163

Query: 158 AHDAVLEAQSYVQSGRRI----VVDVDLEKFFDRVNHDILIDRLSKRISDRRVIRLIRAY 213
             DA+   Q +V   +++    V++ D++  FD +NHD LI  +    +D+ V   +R +
Sbjct: 164 TADAM--GQLFVCLSKKVSAQWVLEADIKGCFDHINHDWLITNVP---TDKVV---LRKW 215

Query: 214 LNSGIMDHGVVQERVMGTPQGGPLSPLLANVLLDEVDKELERRGHC---------FVRYA 264
           L +G++  G +Q    GTPQGG +SP LAN++LD ++ +L++              VRYA
Sbjct: 216 LKAGVIHKGQLQATDAGTPQGGIVSPSLANLVLDGLESQLKQHLGVTKAKKLKINVVRYA 275

Query: 265 DDCNVYVGSRKAGE-RVMALLRRLYGRLHLTINEGKSAVTSV-FGRKFLGFSFWRGRDGA 322
           DD  +   SR+  E  V   + +      L ++  K+ V  +  G  FLG++F R  DG 
Sbjct: 276 DDFVITGTSREVLETEVRPWVEQFLAVRGLQLSLEKTRVVHIKEGFDFLGWNF-RKYDGK 334

Query: 323 VKRRVADKPLNAFKRRVRQLTRRSGGRSMAEVAERLRVYVLGWKAYFRLAQTPRLFKELE 382
           +  + + K + AF  +VR++   S      ++  +L   + GW  Y +     + +  ++
Sbjct: 335 LLIKPSKKNVKAFYSKVREVISTSKTVRQEDLIRQLNPILRGWAFYHQPVVAKKAYSRMD 394

Query: 383 EWMRHRVRAIQLKHWKRGKTTYKALLAKGAK 413
             +      + L  W + +   K L   GAK
Sbjct: 395 YMI-----FLALWRWAKRRHPKKTLQWIGAK 420