Pairwise Alignments

Query, 439 a.a., ABC transporter for L-Fucose, periplasmic substrate-binding protein (from data) from Sinorhizobium meliloti 1021

Subject, 479 a.a., transporter, putative (RefSeq) from Shewanella amazonensis SB2B

 Score = 57.4 bits (137), Expect = 1e-12
 Identities = 61/266 (22%), Positives = 120/266 (45%), Gaps = 34/266 (12%)

Query: 116 SEEVAKFVPAVIDASTLEGKLVMLPRAQFDVSALYFQKSLYQDEAKKTEFKAKYGYDLAP 175
           S  +  + P+++   +  G++  +P   + V   +F++ L+++  ++  F  +YGY L  
Sbjct: 131 SRYLEPYYPSLLSILSYRGEVHAIPYNNY-VMGNHFRRDLFENADEQKHFLERYGYPLKA 189

Query: 176 PDTWAQVSDQAEFFAAPPN-----------FYGTQ-FAGKEEAINGRFYEMLVAEGGEYL 223
           PDT  Q+ D AEFF   P            FYG    +G +  IN  F  +L + G  + 
Sbjct: 190 PDTLVQLKDIAEFFTRKPGDVLAGKLLKQPFYGVALMSGNKPHINDEFSAILWSMGDRWF 249

Query: 224 ----DKDGR-----PAFNSDAGVRALEWFVKLYKDKAVPPGTTNYLWDDLGQGFASGSIA 274
               + +GR      + N D  ++   ++  + K  A+P     + +++     A+G +A
Sbjct: 250 TPVYEDNGRLNHFEVSRNLDKKLQVANYYQSI-KPFAIPADDA-FAFNEAADALANGRVA 307

Query: 275 VNLDWPGWASFFND--PKSSKVAGNV-GVKVQPAGSSGKRTGWSGHHGFSVTESCADKEA 331
           +      W   +N+   KS+ V   V G ++  A  +G +  + G + F+V+    + EA
Sbjct: 308 M------WPFAYNNLWLKSAVVEKKVEGARLDVAQVAGGKP-YVGAYAFAVSYDSRNPEA 360

Query: 332 AASLVWWLTNEDSQKLESAAGPLPTR 357
           A  L+ ++ +  +Q   +  G  P R
Sbjct: 361 AYWLLKYMGSFQAQYDYAMGGGNPCR 386