Pairwise Alignments

Query, 439 a.a., ABC transporter for L-Fucose, periplasmic substrate-binding protein (from data) from Sinorhizobium meliloti 1021

Subject, 481 a.a., transporter, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 58.2 bits (139), Expect = 6e-13
 Identities = 90/415 (21%), Positives = 174/415 (41%), Gaps = 81/415 (19%)

Query: 51  ERIGEWEKATGAKVNILSKK--NHFELDKEI------KSDIATGGLTWCVGSNHSSFAPQ 102
           E + ++ + TG KVN++S +  + FEL  +       K D+ T    W      + +   
Sbjct: 54  EMLPKFTEKTGVKVNVISTELESMFELQTQALLMGEGKYDLLTMEAGWAKEWAANGYTVP 113

Query: 103 YPDIYADLFGLIPSEEVAK------FVPAVIDASTLEGKLVMLPRAQFDVSALYFQKSLY 156
             ++ A L+   P  E A       + P++++  +   +L  +P   + V   +++  L+
Sbjct: 114 LLEL-AKLYD--PDGEKAMESYLEPYYPSLLNILSYNRELHAIPYNNY-VMGSHYRADLF 169

Query: 157 QDEAKKTEFKAKYGYDLAPPDTWAQVSDQAEFF--------AAPP---NFYG-TQFAGKE 204
           +++ ++  F  ++GY L P     +++DQA FF        A  P   +FYG    +G +
Sbjct: 170 ENKTEQAHFLQRFGYPLKPATNVEELADQAVFFTRKAGELLAEKPLTHDFYGLALMSGNK 229

Query: 205 EAINGRFYEMLVAEGGEYLDKDGRPAFNSDAGVRALEWFVKLYKDKAVP----------- 253
             IN  F  ++ + GG ++     P +N    +   E  V     +A+            
Sbjct: 230 PHINDEFSSIIWSLGGAWM----WPIYNQQKKLTHFE--VPTVNQEAIKAGLAYRQLMPY 283

Query: 254 --PGTTNYLWDDLGQGFASGSIAVNLDWPGWASFFND--PKSSKVAGNV-----GVKVQP 304
             P    + +++     A+G +A+      W   +N+    S KV  N+     GV   P
Sbjct: 284 AYPADDKFAFNEAANAMATGQVAI------WPFAYNNLWHASFKVEANIPGARLGVSQVP 337

Query: 305 AGSSGKRTGWSGHHGFSVTESCADKEAAASLVWWLTNEDSQKLESAAGPLPTRSAVWDFN 364
            G     T ++G + F+V+    + +AA  L+ ++   ++Q   +  G  P R  V    
Sbjct: 338 GG-----TPYNGAYAFAVSYDSKNPQAAYWLLKYMGTFEAQYAYALGGGNPCRMDV---- 388

Query: 365 IKAAE-GDAYKTEVLQAFQEAAKHAFPVPQTAEWIEISN-------AVYPELQAA 411
           + A E  +A K  +  AF+  A H   +  + + +E+ +        +YPEL  A
Sbjct: 389 VTAPEFKNASKRAIAGAFE--ASHVANLFWSTKVLELGHFTSTAMGQIYPELSRA 441