Pairwise Alignments

Query, 455 a.a., OMA family outer membrane saccharide export protein from Sinorhizobium meliloti 1021

Subject, 921 a.a., polysaccharide biosynthesis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 49.3 bits (116), Expect = 5e-10
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 13/121 (10%)

Query: 39  EYLLGPQDKVRVKIY-EWRASRDVIFEWKALNDTFTVSAGGTLSLPFVGAIPAAGLTPNS 97
           EYL+GP D +++++Y +     D++           ++  G +  P +G IP  GLT + 
Sbjct: 140 EYLVGPGDNIKIQLYGKENKEYDLV-----------INREGVIQFPELGPIPVNGLTFSE 188

Query: 98  LAYAIGDNLKRNMGLGRRPDAAVEVIQYRPFYIVGHVMQPGEFPYRPELTVLQALSIAGG 157
           L   +   +++ M +G   +  +  ++    ++ G   +PG +      T+ QAL +AGG
Sbjct: 189 LRETLAQRIQQQM-IGIESNITMGELRSIRIFVAGDAYKPGSYTVSSLSTITQALFVAGG 247

Query: 158 L 158
           +
Sbjct: 248 V 248



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 130 IVGHVMQPGEFPYRPELTVLQALSIAGGLRTREESIARFEREMIQGRGDV 179
           ++G V  P    ++  LT+ Q L+++GG R R ++   +   +IQ  G V
Sbjct: 819 VMGEVQHPATHRFKDGLTIDQYLAMSGGARERADAGRTY---VIQANGSV 865