Pairwise Alignments

Query, 636 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 307 a.a., DNA polymerase LigD, polymerase domain from Pseudomonas stutzeri RCH2

 Score =  130 bits (327), Expect = 8e-35
 Identities = 85/272 (31%), Positives = 139/272 (51%), Gaps = 10/272 (3%)

Query: 358 KPKPTTAPASIRVPPANILQLLPEAVVPSKEELANYWTRVADRALHFLGGRPLKLVRH-- 415
           K K T  P    +  +N  +++  A   +K  LA Y+  VAD  +  L GRPL +VR   
Sbjct: 4   KRKSTERPLVGGIGISNPQRVIDAATGTTKFALAEYYLSVADWLVPQLAGRPLSIVRAPE 63

Query: 416 -IHGTTFY--HKGPLPPIPPEVHQLRIEKREGGAGVRL-WVDDLAGLLGLVEIGAVELHP 471
            I G +F+  H G L  +P   H   + K       RL   D++  +L  V++G+VE H 
Sbjct: 64  GIGGESFFQRHCGRLK-MP---HMRALPKDLDPEHARLIQADNITAVLEAVQMGSVEFHT 119

Query: 472 WAASVDDIEHADALIFDLDPGEGVSWAFVVETALRLREFLEAEGFKTWPKLTGGKGVHLM 531
           W A  D IE  D +IFDLDP   + W+ +++T       L+  G + + K +GG+G+H++
Sbjct: 120 WNARSDRIERPDRVIFDLDPDPALPWSRMIDTTELTLALLDELGLRAFLKTSGGRGMHVV 179

Query: 532 SPLPAKMTHNAAHAYAKRLAQQFASTDPDRYVTSAQLSRRPGKLFLDYLRNGRGTTAVGT 591
            P+  +   +   ++A+ + Q+     P+R         R G++F+DYLRN RG + V  
Sbjct: 180 VPIERRHDWDCVRSFAQGVTQRLGRQHPERIACKMGAQNRVGRIFVDYLRNQRGASTVAA 239

Query: 592 YSPRARSGFPVAAPVTWRDIERGIKPDAFTIG 623
           +S RAR G  V+ PV+  ++ +    D + +G
Sbjct: 240 FSVRARPGLGVSLPVSLDEMRQLEGADQWRLG 271