Pairwise Alignments

Query, 557 a.a., oligopeptidemurein peptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 536 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  351 bits (900), Expect = e-101
 Identities = 208/544 (38%), Positives = 317/544 (58%), Gaps = 25/544 (4%)

Query: 10  LLRVENLGLRHVSGSATTPILSDVSFELGRGEILGIIGESGAGKSTVGNAILGLLS-PEF 68
           L+ V +L +  + G     ++  VSF++ RGE L ++GESG+GKS   ++IL LL  P  
Sbjct: 6   LIEVRDLAVEFIVGERRQRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYPLA 65

Query: 69  QQTSGTIEFDGKAIDGMTADERETLRGRRISAIFQDHTASLDPLMSVGAQVEETCLALDS 128
              +GTI++ G+ + G+       +RG RI+ IFQ+   SL+PL S+  Q+ E  L +  
Sbjct: 66  HHPTGTIQYAGQNLLGLKEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEV-LGIHK 124

Query: 129 SLSRREARARAIDLLARVGIPEPERRYRNYPHQFSGGQRQRVVIAIALAGSPDIIIADEP 188
            LS + A  R ++LL  VGIPEP +R +  PH+ SGGQRQRV+IA+ALA  P+++IADEP
Sbjct: 125 GLSGKVATRRTLELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADEP 184

Query: 189 TSALDATVQKQVLELLKILVDETGVSIILVTHDMGVISEITNRVLVMRKGQVVEADRTTA 248
           T+ALD TVQ ++LELLK L    G+S++L++HD+ ++  I +RV VM++G +VE      
Sbjct: 185 TTALDVTVQLKILELLKQLQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQASCEE 244

Query: 249 ILDQPRHDYTKKLLAAVPRLRIPTRTAKAEDNGRQADSPAIDSDQNPLLIAEGLSKQFAP 308
           +   P+H YT++LL A P                 + +PA +    PLL  E L   F  
Sbjct: 245 LFRAPQHPYTRELLGAEP-----------------SGTPASNVVGPPLLQVEDLKVWFPI 287

Query: 309 QG--FAWGIGRGKPRFGLRDVGIRLARGSITGIVGESGSGKTTFGRILAGLDTAPTGRIT 366
           +   F   +   K   G+R     L +G   GIVGESGSGK+T G  +  L  +  G   
Sbjct: 288 KKGLFKRTVDYIKAVDGIR---FSLPQGQTLGIVGESGSGKSTLGLAILRLIGSQGGIRF 344

Query: 367 IGEHPFDVSQSGRRSGLLGRVQMIFQDPSVSLNPRMTIGETLDESIRFGARIRSGEEPAD 426
            G+    ++Q   R  L   +Q++FQDP  SL+PRM + + + E +R        E+   
Sbjct: 345 EGKQLDSLTQQQVRP-LRREMQVVFQDPFGSLSPRMCVSQIVGEGLRIHKIGTEAEQEQA 403

Query: 427 LAAMMDRLGLPRSLLGRHPHQLSGGQKQRVCIARALLARPEIIVADEPTSALDVSVQAEI 486
           + A +  +GL      R+PH+ SGGQ+QR+ IARAL+ +P +I+ DEPTSALD +VQ ++
Sbjct: 404 IIAALKEVGLDPETRNRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQV 463

Query: 487 VQLLKDTIAERAMTMVFISHDLAIVQAMCSSVYIFKDGRIEDFGPTEFIFSRSDNPYTRA 546
           V+LL+    +  +T +FISHDLA+V+A+   + + K G++ + G    IF+   +PYT+ 
Sbjct: 464 VELLRSLQTKYNLTYLFISHDLAVVKALSHQLMVVKHGQVVEQGDARSIFAAPQHPYTQQ 523

Query: 547 LINA 550
           L+ A
Sbjct: 524 LLEA 527



 Score =  134 bits (338), Expect = 7e-36
 Identities = 84/234 (35%), Positives = 127/234 (54%), Gaps = 8/234 (3%)

Query: 327 VGIRLARGSITGIVGESGSGKTTFGRILAGL-----DTAPTGRITI-GEHPFDVSQSGRR 380
           V   + RG    +VGESGSGK+     +  L        PTG I   G++   + +   R
Sbjct: 29  VSFDIKRGETLALVGESGSGKSVTAHSILRLLPYPLAHHPTGTIQYAGQNLLGLKEKTIR 88

Query: 381 SGLLGRVQMIFQDPSVSLNPRMTIGETLDESIRFGARIRSGEEPADLAAMMDRLGLPR-- 438
                R+ MIFQ+P  SLNP  +I + ++E +     +           +++ +G+P   
Sbjct: 89  HIRGNRIAMIFQEPMTSLNPLHSIEKQINEVLGIHKGLSGKVATRRTLELLELVGIPEPH 148

Query: 439 SLLGRHPHQLSGGQKQRVCIARALLARPEIIVADEPTSALDVSVQAEIVQLLKDTIAERA 498
             L   PH+LSGGQ+QRV IA AL   PE+++ADEPT+ALDV+VQ +I++LLK   A   
Sbjct: 149 KRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELLKQLQARLG 208

Query: 499 MTMVFISHDLAIVQAMCSSVYIFKDGRIEDFGPTEFIFSRSDNPYTRALINARP 552
           M+++ ISHDL +V+ +   V + + G I +    E +F    +PYTR L+ A P
Sbjct: 209 MSLLLISHDLNLVRRIAHRVCVMQRGCIVEQASCEELFRAPQHPYTRELLGAEP 262