Pairwise Alignments

Query, 557 a.a., oligopeptidemurein peptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 524 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N1B4

 Score =  342 bits (878), Expect = 2e-98
 Identities = 199/525 (37%), Positives = 309/525 (58%), Gaps = 27/525 (5%)

Query: 29  ILSDVSFELGRGEILGIIGESGAGKSTVGNAILGLLSPEFQQTSGTIEFDGKAIDGMTAD 88
           ++ ++  ++  GE L ++GESG GKS   ++IL LL     +T+G+I + G+ + G    
Sbjct: 20  VVRNLCLDIRPGECLALVGESGCGKSVTAHSILQLLPETGTETTGSIRYRGQELIGTDIK 79

Query: 89  ERETLRGRRISAIFQDHTASLDPLMSVGAQVEETCLALDSSLSRREARARAIDLLARVGI 148
               LRG RI+ IFQ+   SL+PL SV  Q+ ET L L   L  + A+AR ++LL  VGI
Sbjct: 80  TLRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETLL-LHRGLGGKAAQARILELLQLVGI 138

Query: 149 PEPERRYRNYPHQFSGGQRQRVVIAIALAGSPDIIIADEPTSALDATVQKQVLELLKILV 208
            +PE R + YPHQ SGGQRQRV+IA+ALA  P+++IADEPT+ALD TVQ+++L LLK L 
Sbjct: 139 QKPEERLKAYPHQLSGGQRQRVMIAMALACEPELLIADEPTTALDVTVQRKILLLLKSLQ 198

Query: 209 DETGVSIILVTHDMGVISEITNRVLVMRKGQVVEADRTTAILDQPRHDYTKKLLAAVPRL 268
              G+S++L++HD+ ++  I  RV VM+ G++VE      +  +P+H Y+  LL A P  
Sbjct: 199 QRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAPCETLFTEPKHPYSCVLLHAEP-- 256

Query: 269 RIPTRTAKAEDNGRQADSPAIDSDQ-NPLLIAEGLSKQFAPQGFAWGIGRGKPRFGLRD- 326
                           +  A+  D+   +L  + L   FA  G   G+ + K      D 
Sbjct: 257 ----------------EGEALPRDEREKVLEVDNLQVHFAIGG---GLFQRKTYLRAVDG 297

Query: 327 VGIRLARGSITGIVGESGSGKTTFGR-ILAGLDTAPTGRITIGEHPFDVSQSGRRSGLLG 385
           + + + RG   GIVGESGSGK+T G+ IL  LD+   G I       D     +      
Sbjct: 298 ISLNVQRGKTLGIVGESGSGKSTLGQAILRLLDS--EGSIRFQGEALDGLTQKQLRPWRK 355

Query: 386 RVQMIFQDPSVSLNPRMTIGETLDESIRFGARIRSGEEPADLAAMMDRLGLPRSLLGRHP 445
           ++Q++FQDP  SL+PRM++ + + E +   ++    E  A +  +++ +GL      R+P
Sbjct: 356 KMQVVFQDPFGSLSPRMSVAQIISEGLEVHSQSTPDECEAQVIRVLEEVGLDPQSRHRYP 415

Query: 446 HQLSGGQKQRVCIARALLARPEIIVADEPTSALDVSVQAEIVQLLKDTIAERAMTMVFIS 505
           H+ SGGQ+QR+ IARAL+ +P +I+ DEPTSALD +VQ ++V LL+    +  +T +FIS
Sbjct: 416 HEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQKQVVALLRQLQEKYGLTYLFIS 475

Query: 506 HDLAIVQAMCSSVYIFKDGRIEDFGPTEFIFSRSDNPYTRALINA 550
           HDLA+++A+   + + KDG++ + G +  +F    +PYT+ L+ A
Sbjct: 476 HDLAVIRALAHDMIVIKDGKVVESGASHDVFDSPQHPYTKELLAA 520



 Score =  138 bits (348), Expect = 5e-37
 Identities = 82/237 (34%), Positives = 131/237 (55%), Gaps = 7/237 (2%)

Query: 324 LRDVGIRLARGSITGIVGESGSGKTTFG----RILAGLDTAPTGRITI-GEHPFDVSQSG 378
           +R++ + +  G    +VGESG GK+       ++L    T  TG I   G+         
Sbjct: 21  VRNLCLDIRPGECLALVGESGCGKSVTAHSILQLLPETGTETTGSIRYRGQELIGTDIKT 80

Query: 379 RRSGLLGRVQMIFQDPSVSLNPRMTIGETLDESIRFGARIRSGEEPADLAAMMDRLGL-- 436
            R     R+ MIFQ+P  SLNP  ++ + + E++     +      A +  ++  +G+  
Sbjct: 81  LRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETLLLHRGLGGKAAQARILELLQLVGIQK 140

Query: 437 PRSLLGRHPHQLSGGQKQRVCIARALLARPEIIVADEPTSALDVSVQAEIVQLLKDTIAE 496
           P   L  +PHQLSGGQ+QRV IA AL   PE+++ADEPT+ALDV+VQ +I+ LLK     
Sbjct: 141 PEERLKAYPHQLSGGQRQRVMIAMALACEPELLIADEPTTALDVTVQRKILLLLKSLQQR 200

Query: 497 RAMTMVFISHDLAIVQAMCSSVYIFKDGRIEDFGPTEFIFSRSDNPYTRALINARPQ 553
             M+++ ISHDL +V+++   V + K G I +  P E +F+   +PY+  L++A P+
Sbjct: 201 LGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAPCETLFTEPKHPYSCVLLHAEPE 257