Pairwise Alignments

Query, 557 a.a., oligopeptidemurein peptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 553 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  360 bits (925), Expect = e-104
 Identities = 224/555 (40%), Positives = 314/555 (56%), Gaps = 28/555 (5%)

Query: 1   MTVEHVTTPLLRVENLGLRHVSGSATTPILSDVSFELGRGEILGIIGESGAGKSTVGNAI 60
           + V  +  PLL VENL +R  +G      +  VSF + +GE L ++GESG+GKS    +I
Sbjct: 8   LPVAPLLPPLLSVENLQVRFGAGPEAVDAVRGVSFTIAKGETLALVGESGSGKSVTALSI 67

Query: 61  LGLLS-PEFQQTSGTIEFDGKAIDGMTADERETLRGRRISAIFQDHTASLDPLMSVGAQV 119
             LL  P      G I FD + +          +RG RIS IFQ+   SL+PL S+  QV
Sbjct: 68  TRLLPYPPASHPGGAIFFDSEDLLHAPGARLRDVRGNRISMIFQEPMTSLNPLHSIERQV 127

Query: 120 EETCLALDSSLSRREARARAIDLLARVGIPEPERRYRNYPHQFSGGQRQRVVIAIALAGS 179
            E  L L   L  +  RAR IDLL  VG+P+ E R    PH+ SGGQRQRV+IA+ALA  
Sbjct: 128 GEV-LTLHKGLHGKARRARVIDLLRLVGLPQVEGRLGALPHELSGGQRQRVMIAMALANE 186

Query: 180 PDIIIADEPTSALDATVQKQVLELLKILVDETGVSIILVTHDMGVISEITNRVLVMRKGQ 239
           PD++IADEPT+ALD T+Q Q+L LL  L    G++I+ +THD+ ++  + +RV VM+ G 
Sbjct: 187 PDLLIADEPTTALDVTIQAQILALLADLQKRFGMAILFITHDLSIVRRVADRVAVMKDGL 246

Query: 240 VVEADRTTAILDQPRHDYTKKLLAAVPRLRIPTRTAKAEDNGRQADSPAIDSDQNPLLIA 299
           +VE   T A+   P H YTK LLA+ PR                  +P +  +   +L  
Sbjct: 247 IVETGTTAALFAAPSHPYTKALLASEPR-----------------GTPRLVPNAPEILSC 289

Query: 300 EGLSKQFAPQG--FAWGIGRGKPRFGLRDVGIRLARGSITGIVGESGSGKTTFGRILAGL 357
           + L   F  +       +G  K   G   +   L  G   G+VGESGSGKTT G  L  L
Sbjct: 290 DDLKVWFPIRKGVIRRTVGHIKAVDG---ISFSLKAGETLGVVGESGSGKTTLGLGLLRL 346

Query: 358 DTAPTGRITIGEHPFDVSQSGRRSGLLGRVQMIFQDPSVSLNPRMTIGETLDESIRFG-- 415
            ++    +  G     +S +  R  L  R+Q++FQDP  SL+PR+++GE + E +     
Sbjct: 347 VSSQGAIVFSGTRLDGLSNTAMRP-LRRRLQIVFQDPYGSLSPRLSVGEIIGEGLAVHGL 405

Query: 416 ARIRSGEEPADLAAMMDRLGLPRSLLGRHPHQLSGGQKQRVCIARALLARPEIIVADEPT 475
           A  R+G   A +   +  +GL  +   R+PH+ SGGQ+QR+ IARAL+ +PE+IV DEPT
Sbjct: 406 AGDRAGRR-ALVTQALSEVGLDPATQDRYPHEFSGGQRQRIAIARALVLKPEVIVLDEPT 464

Query: 476 SALDVSVQAEIVQLLKDTIAERAMTMVFISHDLAIVQAMCSSVYIFKDGRIEDFGPTEFI 535
           SALDV+VQA+IV LL+D     A+  VFISHDL +V+A+ + V + KDG++ + G  E I
Sbjct: 465 SALDVTVQAQIVDLLRDIQTRHAIAYVFISHDLRVVRALAAQVLVMKDGKVVEAGSGEQI 524

Query: 536 FSRSDNPYTRALINA 550
           F    + YTRAL+ A
Sbjct: 525 FQAPRHDYTRALLAA 539



 Score =  149 bits (377), Expect = 2e-40
 Identities = 96/267 (35%), Positives = 142/267 (53%), Gaps = 16/267 (5%)

Query: 295 PLLIAEGLSKQFAPQGFAWGIGRGKPRFGLRDVGIRLARGSITGIVGESGSGKTTFGRIL 354
           PLL  E L  +F     A    RG        V   +A+G    +VGESGSGK+     +
Sbjct: 16  PLLSVENLQVRFGAGPEAVDAVRG--------VSFTIAKGETLALVGESGSGKSVTALSI 67

Query: 355 AGL-----DTAPTGRITIGEHPFDVSQSGRRSGLLG-RVQMIFQDPSVSLNPRMTIGETL 408
             L      + P G I         +   R   + G R+ MIFQ+P  SLNP  +I   +
Sbjct: 68  TRLLPYPPASHPGGAIFFDSEDLLHAPGARLRDVRGNRISMIFQEPMTSLNPLHSIERQV 127

Query: 409 DESIRFGARIRSGEEPADLAAMMDRLGLPR--SLLGRHPHQLSGGQKQRVCIARALLARP 466
            E +     +      A +  ++  +GLP+    LG  PH+LSGGQ+QRV IA AL   P
Sbjct: 128 GEVLTLHKGLHGKARRARVIDLLRLVGLPQVEGRLGALPHELSGGQRQRVMIAMALANEP 187

Query: 467 EIIVADEPTSALDVSVQAEIVQLLKDTIAERAMTMVFISHDLAIVQAMCSSVYIFKDGRI 526
           ++++ADEPT+ALDV++QA+I+ LL D      M ++FI+HDL+IV+ +   V + KDG I
Sbjct: 188 DLLIADEPTTALDVTIQAQILALLADLQKRFGMAILFITHDLSIVRRVADRVAVMKDGLI 247

Query: 527 EDFGPTEFIFSRSDNPYTRALINARPQ 553
            + G T  +F+   +PYT+AL+ + P+
Sbjct: 248 VETGTTAALFAAPSHPYTKALLASEPR 274