Pairwise Alignments

Query, 343 a.a., sugar ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 314 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Herbaspirillum seropedicae SmR1

 Score = 68.9 bits (167), Expect = 2e-16
 Identities = 61/262 (23%), Positives = 116/262 (44%), Gaps = 11/262 (4%)

Query: 9   SALAAALLAGTVLASGAAHAENQIAFIPKLVGVGFFTSGGAGAVKAGEEVGAK---VTYD 65
           +ALA A+L G  +A     A+ ++A + K +   FF +   GA +  +   +K   +   
Sbjct: 12  AALACAVLPGAAMAQ--TPAKPKVALVMKSLANEFFLNMENGAREYQKANASKFDLIANG 69

Query: 66  GPTEPSVSGQVQFINNFVNQGYNALIVSSVSPDGLCPALKRAMERGVLVMTWDSDVNPDC 125
              E   + Q++ +   +    NAL+++      L P +K+A++ G++V+  D+ ++   
Sbjct: 70  IKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVNIDNKLDDAA 129

Query: 126 ---RSYYINQGTPEQLGGLLVDMAAEGVKKEKA-KVAFFYSSPTVTDQNAWAEAAKAKIA 181
              +   +    P+   G  +     G + +K  KVA      T    NA       + A
Sbjct: 130 LKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTF--NAQQRTLGFQDA 187

Query: 182 KEHPGWEIVTTQYGYNDAQKSLQTAESILQTYPDLDAIIAPDANALPAAAQAAENLKRAE 241
            +  G  +VT Q G  +  +  + A SIL  +PD+ AI+A + N    A  A     +  
Sbjct: 188 MKDVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMALGAVAAIRAAGKTG 247

Query: 242 GVTIVGFSTPNVMRPYIERGTI 263
            V +VG+   N ++P ++ G +
Sbjct: 248 KVQLVGYDNINAIKPMLKDGRV 269