Pairwise Alignments

Query, 907 a.a., two-component sensor histidine kinase from Sinorhizobium meliloti 1021

Subject, 801 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 84.0 bits (206), Expect = 3e-20
 Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 3/143 (2%)

Query: 567 AVAAAVDITGRKQAEEALQESERRLQLALDAGHMGAWEWNLETGEVIWSPGLEALHRIEP 626
           A+A   +   R QAE+AL+E E R +LA+DA  +G W++  ++  +IW     A+  ++ 
Sbjct: 122 ALAEVNERRRRLQAEQALREVEVRARLAIDAARLGMWDYEPQSDTLIWDERCRAMLEVDT 181

Query: 627 GSFGGTLADFKRDIHPDDLPLIEREMARAI--ETDGDYHVVYRAQLPDGTIRWMEAFGQL 684
            +    +  F+   HPDD   I  ++A AI  E  G++   YR    DG++RWME  GQ 
Sbjct: 182 QT-PVDMPLFESLCHPDDRERIRDQVAGAISGENAGEFCTTYRVLFKDGSLRWMETRGQA 240

Query: 685 SPRNGPKRRLTGVCMDITERREA 707
               G   R  GV MDITE++ A
Sbjct: 241 FFEGGQCTRFVGVVMDITEQQLA 263



 Score = 52.0 bits (123), Expect = 1e-10
 Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 25/198 (12%)

Query: 121 FDDTGALTGAVNVLMDLS----GAKDMERSSRYLAAIV-----------ESSDDAIVAKN 165
           F + G  T  V V+MD++      + +++ +  L   V           E S D +   +
Sbjct: 241 FFEGGQCTRFVGVVMDITEQQLATQTLKQQNETLGERVQQRTRERDRTWELSRDLLAVTD 300

Query: 166 LDGIITSWNRGAQRLFGYAAEEVIGESITILIPPERLSEEPGILERIRRGELVDHFETKR 225
           L+ +  + N   +  F +  E+++  S+T L+ P+ L        R+ RG + + F  + 
Sbjct: 301 LEMMPVALNPMWELAFDFPLEQLMQHSLTWLVHPDDLQATREENTRVSRGRVANRFVNRM 360

Query: 226 RRKDGTLVDISLTVSPVRDATGRIIGASKIARDITETKSAAEALAARFREQAALYRLTER 285
           R +DG+   +S ++  V D  GRI  A   ARDIT   +A + LA   RE  A  +  ER
Sbjct: 361 RHRDGSYRWLSWSL--VADG-GRIYSA---ARDITSEIAAVDKLAEANRELRAQIQERER 414

Query: 286 VQRT----KRIEEVYEAT 299
           V+ T    +R+E V + T
Sbjct: 415 VEATLQQMQRLEAVGQLT 432



 Score = 26.6 bits (57), Expect = 0.007
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 640 IHPDDLPLIEREMARAIETDGDYHVVYRAQLPDGTIRWM 678
           +HPDDL     E  R          V R +  DG+ RW+
Sbjct: 332 VHPDDLQATREENTRVSRGRVANRFVNRMRHRDGSYRWL 370