Pairwise Alignments

Query, 364 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 849 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Xanthomonas campestris pv. campestris strain 8004

 Score =  167 bits (424), Expect = 7e-46
 Identities = 106/299 (35%), Positives = 156/299 (52%), Gaps = 12/299 (4%)

Query: 20  ARIDPCLASLVDRPPKGPDWAFEVKWDGYRIAVHIEPGRVRILTRGGYDWTERFPTIVDD 79
           A   P LA L   PP+G  W  E+KWDGYRI   +  G+VR+ +R   +WT++ P I D 
Sbjct: 225 AAFAPQLAKLGQAPPEGAQWVHEIKWDGYRILATVTDGQVRLWSRNALEWTDKIPDIRDA 284

Query: 80  ARRLAVKTAILDGEAVVLDDKGRSDFGMLQRALGRLPSAVEAGAIVFYAFDLLYLDGHDL 139
            + L +++A LDGE ++     + DF +LQ  L    S      +    FDLL++DG ++
Sbjct: 285 IQALNLRSARLDGE-LIAGRGTKEDFNLLQATL----SGERQVPLALAVFDLLHIDGVEI 339

Query: 140 RRLPLRERRRLLEPLVA-AREGAVRLSEELQADGDEFFRVACAHGLEGIIAKHIEKPYRS 198
              PLRER++LL+ ++A A  G +  S  ++ DG E FRVA     EGII+K  ++PYR 
Sbjct: 340 SEAPLRERKQLLQQILANAPAGHLAYSSHVEGDGLEAFRVAGEQHFEGIISKRADRPYRG 399

Query: 199 GRGEWWQKITCKSRDSFVIVGF-EPSTVPGHLGRLLLAAREGDEP-VYVGGCGTGWSNKL 256
           GR + W+K    +   + +VG+  P       G LLLA  +     +YVG  G+G+S+ L
Sbjct: 400 GRSDDWRKTKQLASQEYAVVGYTAPKGSRTGFGSLLLATPDPQHGWLYVGRVGSGFSDTL 459

Query: 257 SRELRKLLEGMATKS----PAVDLRRRAAVSVEPVHVADVEYRAWTDDGKLRHASFKGI 311
            +E+ + L G   +     P  D   R A    P  V +V YR       LR AS K +
Sbjct: 460 MQEVTQHLHGGGKRPTAHIPTEDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASLKAV 518