Pairwise Alignments

Query, 1229 a.a., two-component sensor histidine kinase from Sinorhizobium meliloti 1021

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  142 bits (357), Expect = 3e-37
 Identities = 157/659 (23%), Positives = 283/659 (42%), Gaps = 44/659 (6%)

Query: 586  DITERKRAEEALRAREREFSQLVNMVPS--YLWRLTPDGVPNFLNQRLIDFLGPDVVNAN 643
            D+T++   E+ +R  E  F  LV  +P   Y  R+    V  +++  + +  G     A 
Sbjct: 626  DMTQKIMVEQKIRDSELRFRGLVTNIPGAVYRTRIGEVWVIEYVSDNIAEITG----YAA 681

Query: 644  VEGVHPLAAIIGAVVHPDDKTRMSNALFHSVATGERFSMKYRLRRADGVYRWVEGSAEPM 703
             + +        +++  DD+   +  +  ++A  E F ++YR+R  DG  RWV    +  
Sbjct: 682  SQFIENRQRTFTSLILEDDRALCNQHIERALAQQETFEVEYRIRHRDGSIRWVHEKGKAS 741

Query: 704  RDEEGRILQWYGLSHDIDDIMHVEEALRNSKQQLEQMIEAVPFSTLSF---APTG-ELTY 759
              EEG  L + G   D+ +     + +  S+QQL  + E++P +       +PT    T+
Sbjct: 742  YSEEGLPLWFDGSIDDVTESKLAIDEIEASRQQLTNITESIPCTVYQLRWVSPTDRSFTF 801

Query: 760  VSKRYQDQAGAPGAE-IKDFDALAREVAHPDDFPTMFARATQGFATGQPFVNRFRRRLKD 818
            +S       G    E ++DF+ +A  +   ++ P + +           ++  FR R  +
Sbjct: 802  LSGAALAMLGLHREELLRDFNIIAERI-FDEERPEVISALAGKSDDQLRWIREFRYRHPN 860

Query: 819  GNYRWIEARAQPLRRADGPIVQWYFASIDIEEEMRAQEALRERERFLWQLVETLPAMIDC 878
            G  RW+EA A      DG I+ W    +D+ E    +E L   E     L +     I  
Sbjct: 861  GGIRWMEAGASGHYADDGSII-WNGYVMDVTERKSIEEELAVSEAHFKALFDGATIGIVN 919

Query: 879  AAPNGEPVYRSQQLRDFLGYELEELDGGAKSRLDATLDAGVHPDDLAGVKEQYARSLESG 938
                G  +  + Q  + +G   +EL      R     D  +   D    K Q+   +E  
Sbjct: 920  VDIKGLILDCNYQFCEDMGLSRDEL------RSTPIFDV-LSAQDKDVAKAQFKELVEGK 972

Query: 939  -EPYRRKHRLRRFDGEYRWIETRAAPMRDEKGAIVQWNVICLDVDREVRMQEELRLAQER 997
             + YR +    R  GE  W+    + + D +       V  +D+     + +EL +A++ 
Sbjct: 973  IDHYRGERSFVRPSGEPLWMTVNVSTLLDSQNQFESAVVSMVDMTELKLLSDELLVAKDE 1032

Query: 998  LARAGQAASLAELSASIAHEVNQPLAAIVANSHACYR-WLSADPVN----IERAKITTER 1052
               A +A    +  A+++HE+  P+ AI+  S  C +  L     N    IERA  +   
Sbjct: 1033 ADAASKAK--GDFLANMSHEIRTPMNAIIGMSQLCLQTQLDKKQKNYLEKIERASQSLLS 1090

Query: 1053 VIRDAKSAADVVSRIRALFKQSVENRGILVLSDVISEACSLVAAEALRRRIRLNIDVETN 1112
            +I D        S+I A  K  +EN     L  ++ +   + +  A +++I L   V  N
Sbjct: 1091 IINDILD----FSKIEA-GKLDIENVS-FQLDTMLEDLSDMFSERAAQKQIELLFAVAPN 1144

Query: 1113 L-APVTVDRIQVQQVLVNLIRNGMEAMDAVDDNKTVDVRMHQVDDEV-RIEIGDNGNGVA 1170
            +   +  D +++ QVL+NL+ N ++  +  +   ++ +   Q DD V R  + D+G G+ 
Sbjct: 1145 VPRHLLGDPLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQNDDVVLRFSVRDSGIGLT 1204

Query: 1171 FPE--RIFEPF------FTTKENGMGMGLAISRSIVEAHGGRLWAEKNEPRGARFVFTL 1221
              +  ++F+ F       T K  G G+GLAIS+ +VE  GG +  E     G+ F FT+
Sbjct: 1205 QEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGSTFFFTV 1263



 Score = 55.5 bits (132), Expect = 4e-11
 Identities = 89/480 (18%), Positives = 182/480 (37%), Gaps = 53/480 (11%)

Query: 318 IVNMVPVHIRRLTPEGEPTFFNKRLTDFFGLDLQQLEKPNASRLVTAVQTLVHPDDA-DS 376
           ++   P  +  +   G+  F N R    FG D + +       L+      +H  +  D 
Sbjct: 517 VLEAAPEAMLIVDQNGQIVFSNSRCQQLFGYDAKAMLALQIETLLPEELRHLHTGERLDF 576

Query: 377 LLQAVRRSLATGEPYSIKYRMRRADGAYRWVDGRAEPLRDDSGTILQWFAISIDIDDEVR 436
           L +   R +A+        R  ++DG     +     L  D     Q  A   D+  ++ 
Sbjct: 577 LREGRDRPMASAR----HVRALKSDGGEFVAEIALSILPSDFDGRRQVAASIRDMTQKIM 632

Query: 437 MQEALKQSERRYRELFHYMPIGLAQIDAGKLIPMFKEMRAQGVVSLETYMDENPEFLSHA 496
           +++ ++ SE R+R L   +P  + +   G+             V +  Y+ +N       
Sbjct: 633 VEQKIRDSELRFRGLVTNIPGAVYRTRIGE-------------VWVIEYVSDN------- 672

Query: 497 LEALEVEEVNQHVIDMFRANSREEMGGSITRYWQPALATIRRSIEARYRGEEVFQEETRV 556
                + E+  +    F  N +      I    +   A   + IE     +E F+ E R+
Sbjct: 673 -----IAEITGYAASQFIENRQRTFTSLIL---EDDRALCNQHIERALAQQETFEVEYRI 724

Query: 557 ARMDGSVMDVVFAIAQPGAIADKSLV-----GFIDITERKRAEEALRAREREFSQLVNMV 611
              DGS+  V        + +++ L         D+TE K A + + A  ++ + +   +
Sbjct: 725 RHRDGSIRWV--HEKGKASYSEEGLPLWFDGSIDDVTESKLAIDEIEASRQQLTNITESI 782

Query: 612 PSYLWRL----TPDGVPNFLNQRLIDFLGPDVVNANVEGVHPLAAIIGAVVHPDDKTRMS 667
           P  +++L      D    FL+   +  LG      + E +     II   +  +++  + 
Sbjct: 783 PCTVYQLRWVSPTDRSFTFLSGAALAMLG-----LHREELLRDFNIIAERIFDEERPEVI 837

Query: 668 NALFHSVATGERFSMKYRLRRADGVYRWVEGSAEPMRDEEGRILQWYGLSHDIDDIMHVE 727
           +AL        R+  ++R R  +G  RW+E  A     ++G I+ W G   D+ +   +E
Sbjct: 838 SALAGKSDDQLRWIREFRYRHPNGGIRWMEAGASGHYADDGSII-WNGYVMDVTERKSIE 896

Query: 728 EALRNSKQQLEQMIEAVPFSTLSFAPTGELTYVSKRYQDQAGAPGAEIKD---FDALARE 784
           E L  S+   + + +      ++    G +   + ++ +  G    E++    FD L+ +
Sbjct: 897 EELAVSEAHFKALFDGATIGIVNVDIKGLILDCNYQFCEDMGLSRDELRSTPIFDVLSAQ 956



 Score = 46.2 bits (108), Expect = 2e-08
 Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 13/178 (7%)

Query: 292 RQYQLALSNLQQSVAT---LRERERELSQIVNMVPVHIRRLTPEGEP---TFFNKRLTDF 345
           RQ   ++ ++ Q +     +R+ E     +V  +P  + R T  GE     + +  + + 
Sbjct: 618 RQVAASIRDMTQKIMVEQKIRDSELRFRGLVTNIPGAVYR-TRIGEVWVIEYVSDNIAEI 676

Query: 346 FGLDLQQLEKPNASRLVTAVQTLVHPDDADSLLQAVRRSLATGEPYSIKYRMRRADGAYR 405
            G    Q  + N  R  T+   L+  DD     Q + R+LA  E + ++YR+R  DG+ R
Sbjct: 677 TGYAASQFIE-NRQRTFTS---LILEDDRALCNQHIERALAQQETFEVEYRIRHRDGSIR 732

Query: 406 WVDGRAEPLRDDSGTILQWFAISIDIDDEVRMQ-EALKQSERRYRELFHYMPIGLAQI 462
           WV  + +    + G  L WF  SID   E ++  + ++ S ++   +   +P  + Q+
Sbjct: 733 WVHEKGKASYSEEGLPL-WFDGSIDDVTESKLAIDEIEASRQQLTNITESIPCTVYQL 789