Pairwise Alignments
Query, 1229 a.a., two-component sensor histidine kinase from Sinorhizobium meliloti 1021
Subject, 842 a.a., PAS domain S-box protein from Ralstonia sp. UNC404CL21Col
Score = 162 bits (409), Expect = 1e-43
Identities = 131/423 (30%), Positives = 196/423 (46%), Gaps = 20/423 (4%)
Query: 813 RRRLKDGNYRWIEARAQPLRRADGPIVQWYFASIDIEEEMRAQEALRERERFLWQLVETL 872
R +DG + PL A G W + DI E RA+E L ++E+L
Sbjct: 423 RMMRRDGTSFYARMYVSPLIDARGRHTGWMSSITDITEPKRAREDLAAAHDRFTTVLESL 482
Query: 873 PAMIDCAAPN-GEPVYRSQQLRDFLGYELE---ELDGGAKSRLDATLDAGVHPDDLAGVK 928
A + + + E ++ ++ R G+E +L G + D + DA D AG+
Sbjct: 483 DAAVSVLSTDKAELLFANRYYRQLFGWEAFGHLQLSGNDVNTEDVSSDALDLVDAYAGLP 542
Query: 929 EQYARSLESGEPYRRKHRLRRFDGEYRWIETRAAPMRDEKGAIVQWNVICLDVDREVRMQ 988
P+ R +W E R ++ G + Q I D+ +
Sbjct: 543 ASELT------PHAADAREIYVPSMQKWFEVRRRYIQWVDGHLAQMQ-IATDITVRKAAE 595
Query: 989 EELRLAQERLARAGQAASLAELSASIAHEVNQPLAAIVANSHACYRWLSADPVNIERAKI 1048
E R +ERL + ++ E+++S+AHE+NQPLAAI L + E
Sbjct: 596 EMTRQHEERLQFTSRLTTMGEMASSLAHELNQPLAAINNYCMGAVGRLKSGRSTPEELIP 655
Query: 1049 TTERVIRDAKSAADVVSRIRALFKQSVENRGILVLSDVISEACSLVAAEALRRRIRLNID 1108
E+ A A ++ RIR K+S R L D++++A L EA RR I +
Sbjct: 656 VLEKTSAQAVRAGTIIQRIRGFVKRSQPQRRESDLRDIVADAVGLAELEATRRGITILTR 715
Query: 1109 VETNLAPVTVDRIQVQQVLVNLIRNGMEAMDAVDDNKTVDV-RMH-----QVDDEVRIEI 1162
+ +L + VD + ++QVLVNL++N EAM A + V R+H ++ V IE+
Sbjct: 716 LPGDLPHLYVDPVLIEQVLVNLLKNAAEAMAAHPRLRAASVLRLHANLINDPENSVLIEV 775
Query: 1163 GDNGNGV--AFPERIFEPFFTTKENGMGMGLAISRSIVEAHGGRLWAEKN-EPRGARFVF 1219
D G GV + ER+FEPFF+TK +GMGMGL I RSI+E+H GRLW E N + G F
Sbjct: 776 IDQGPGVDDSTKERLFEPFFSTKSDGMGMGLNICRSIIESHLGRLWVENNADGIGCTFKI 835
Query: 1220 TLP 1222
LP
Sbjct: 836 ILP 838
Score = 38.1 bits (87), Expect = 3e-06
Identities = 47/204 (23%), Positives = 78/204 (38%), Gaps = 9/204 (4%)
Query: 682 MKYRLRRADGVYRWVEGSAEPMRDEEGRILQWYGLSHDIDDIMHVEEALRNSKQQLEQMI 741
M+ R+ R DG + P+ D GR W DI + E L + + ++
Sbjct: 420 MELRMMRRDGTSFYARMYVSPLIDARGRHTGWMSSITDITEPKRAREDLAAAHDRFTTVL 479
Query: 742 EAV--PFSTLSFAPTGELTYVSKRYQDQAGAPG---AEIKDFDALAREVAHPDDFPTMFA 796
E++ S LS EL + ++ Y+ G ++ D +V+ D + A
Sbjct: 480 ESLDAAVSVLS-TDKAELLFANRYYRQLFGWEAFGHLQLSGNDVNTEDVS-SDALDLVDA 537
Query: 797 RATQGFATGQPFVNRFRRRLKDGNYRWIEARAQPLRRADGPIVQWYFASIDIEEEMRAQE 856
A + P R +W E R + ++ DG + Q A+ DI A+E
Sbjct: 538 YAGLPASELTPHAADAREIYVPSMQKWFEVRRRYIQWVDGHLAQMQIAT-DITVRKAAEE 596
Query: 857 ALRERERFLWQLVETLPAMIDCAA 880
R+ E L Q L M + A+
Sbjct: 597 MTRQHEERL-QFTSRLTTMGEMAS 619
Score = 37.0 bits (84), Expect = 7e-06
Identities = 62/326 (19%), Positives = 118/326 (36%), Gaps = 37/326 (11%)
Query: 371 PDDADSLLQAVRRSLATGEPYS-IKYRMRRADGAYRWVDGRAEPLRDDSGTILQWFAISI 429
P++ + + + +L P + ++ RM R DG + PL D G W +
Sbjct: 397 PNEIGEMQKHIELTLRGKAPANGMELRMMRRDGTSFYARMYVSPLIDARGRHTGWMSSIT 456
Query: 430 DIDDEVRMQEALKQSERRYRELFHYMPIGLAQIDAGKLIPMFKEMRAQGVVSLETY---- 485
DI + R +E L + R+ + + ++ + K +F + + E +
Sbjct: 457 DITEPKRAREDLAAAHDRFTTVLESLDAAVSVLSTDKAELLFANRYYRQLFGWEAFGHLQ 516
Query: 486 ---MDENPEFLS-------HALEALEVEEVNQHVID-----------MFRANSR--EEMG 522
D N E +S A L E+ H D F R + +
Sbjct: 517 LSGNDVNTEDVSSDALDLVDAYAGLPASELTPHAADAREIYVPSMQKWFEVRRRYIQWVD 576
Query: 523 GSITRYWQPALATIRRSIEARYR-GEEVFQEETRVARMDGSVMDVVFAIAQPGAIADKSL 581
G + + T+R++ E R EE Q +R+ M + + QP A +
Sbjct: 577 GHLAQMQIATDITVRKAAEEMTRQHEERLQFTSRLTTMGEMASSLAHELNQPLAAINNYC 636
Query: 582 VGFIDITE--RKRAEEALRAREREFSQ------LVNMVPSYLWRLTPDGVPNFLNQRLID 633
+G + + R EE + E+ +Q ++ + ++ R P + L + D
Sbjct: 637 MGAVGRLKSGRSTPEELIPVLEKTSAQAVRAGTIIQRIRGFVKRSQPQRRESDLRDIVAD 696
Query: 634 FLGPDVVNANVEGVHPLAAIIGAVVH 659
+G + A G+ L + G + H
Sbjct: 697 AVGLAELEATRRGITILTRLPGDLPH 722