Pairwise Alignments

Query, 564 a.a., peptidase, arginine utilization protein RocB from Sinorhizobium meliloti 1021

Subject, 384 a.a., succinyl-diaminopimelate desuccinylase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 45.8 bits (107), Expect = 3e-09
 Identities = 56/202 (27%), Positives = 80/202 (39%), Gaps = 18/202 (8%)

Query: 147 FLPGRGLLDMKSGLAVAIACLEQFAA-DTDRQGNLMLVATPDEERE-SRGMRSLRDALPG 204
           +L GRG  DMK  LA  +   E+F A   +  G++  + T DEE     G   + D L  
Sbjct: 100 YLYGRGAADMKGSLAAMVVATERFVAKHPNHPGSIAFLITSDEEGPFINGTTRVIDTLEA 159

Query: 205 LVRDFDIEIAGGINLDVTSDQGDGSEGRAVYAGTIGKLLPFALVIGCSSHASYPFEGVSA 264
                   + G      T   GD      V  G  G L     V G   H +YP    + 
Sbjct: 160 RNEKITWALVG--EPSSTLKLGD-----VVKNGRRGSLTANLTVKGVQGHVAYPHLADNP 212

Query: 265 QAMAAGILARLEGNASLADRDDNDISPPPICLEAKDLRDGYEVTT--PERFWIAFNWLYH 322
              AA  LA L    S    D+ +   PP  ++  ++  G   +   P    + FN+ Y 
Sbjct: 213 IHKAAPFLAEL----SQTHWDNGNAFFPPTSMQIANINGGTGASNVIPGALEVMFNFRYS 268

Query: 323 S-MTADALFERFREEVLTGANE 343
           + +TA+ L ER   E L  A+E
Sbjct: 269 TEVTAEILIERV--ETLLTAHE 288