Pairwise Alignments

Query, 294 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 313 a.a., Ku domain protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  130 bits (327), Expect = 4e-35
 Identities = 96/307 (31%), Positives = 153/307 (49%), Gaps = 19/307 (6%)

Query: 4   RASWKGYIRLSLVSCPVRLYPATSASERISFNQLHKDTHNRINMKPVDPELG-LVERSDL 62
           R  W G +   L++ PV L       + + F  L       I  + V+ + G  V   ++
Sbjct: 3   RPIWTGTLSFGLLNVPVSLMSGERKVD-LHFRMLDSRDKKPIRFERVNADTGDEVPWKEI 61

Query: 63  VKGYEYEDKKYIIIEDSDLESVRIESNHTMNIEAFVDAGSVDVIYQDAPYYLAPDGAMAE 122
           VK +EY+   Y+I+E+ D+ S   ES+ T+ +E FVDA  +D  Y + PY L P G  AE
Sbjct: 62  VKAFEYDKGSYVIVEEQDIRSAAPESHETVEVETFVDAADIDPRYFEKPYILVP-GKKAE 120

Query: 123 ETFVVLREALRRSGKLAIARLVLSSRERVVTIGPRETGMFVCTLRNPNEVRGTADY---F 179
           + +V+LRE +R +GK+ IA++V+ +RE +  + P+   + +  LR   EV    D+    
Sbjct: 121 KGYVLLRETMRDTGKVGIAKVVIRTREYLAAVMPQGDALILLLLRYQQEVVDPEDFKLPS 180

Query: 180 GNIPVGKPDPEMLQLAEALIEQKTTTFDPKQYEDRYEVALMQMIREKL--KGHKPIIAQA 237
           G +   +   +  ++A+ LIE  +  + P+ Y D +   L Q++R+++  KG    +   
Sbjct: 181 GAVSEYRITAKEQEMAKQLIESMSGRWQPEDYHDEFRGKLEQILRKRIQAKGGTTQVDDE 240

Query: 238 P-----ERGNVVNLMDALKASLSQAKPPARSKPKAEPAAKEPAAKAA---AAKRVTAKPA 289
           P        NVV+ M  L+ SL QA     +K     A   PA K A   AAK+ T K A
Sbjct: 241 PAPHEDATTNVVDFMSLLQKSL-QANTRTPAKKTTAAADTAPAKKTATKKAAKKATKKTA 299

Query: 290 AK--KKA 294
            K  KKA
Sbjct: 300 TKATKKA 306