Pairwise Alignments

Query, 294 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 256 a.a., Ku protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  106 bits (265), Expect = 5e-28
 Identities = 72/259 (27%), Positives = 130/259 (50%), Gaps = 10/259 (3%)

Query: 4   RASWKGYIRLSLVSCPVRLYPATSASERISFNQLHKDTHNRINMKPVDPELGL-VERSDL 62
           R+ WKG I   LV+ PV+L+     S  +  + L +  H +I    V+      V    +
Sbjct: 2   RSIWKGSIGFGLVNIPVKLFSGVQNSN-LDLDMLDERDHAKIKFLRVNENTHKEVPYEKI 60

Query: 63  VKGYEYEDKKYIIIEDSDLESVRIESNHTMNIEAFVDAGSVDVIYQDAPYYLAPDGAMAE 122
           VKGY  +D  Y++++  D E    E    + +E FVD   ++ IY +  YY  P+    +
Sbjct: 61  VKGYFLKDS-YVVLDKHDFEEAAPEKTKIIELENFVDIKDINPIYYETSYYTEPE-KQGK 118

Query: 123 ETFVVLREALRRSGKLAIARLVLSSRERVVTIGPRETGMFVCTLRNPNEVRGTADY--FG 180
           + + +L +AL +SGK  +AR VL + E +  I P E  + +  +R   E+R  ++     
Sbjct: 119 KAYGLLLKALEKSGKAGVARFVLRNTENLCVIHPMEHVIVITKIRFQEEIRSLSEINKVD 178

Query: 181 NIPVGKPDPEMLQLAEALIEQKTTTFDPKQYEDRYEVALMQMIREKLKGHKPIIAQ-APE 239
           +I + K +   + +  ALI+Q ++ FD   ++D Y   L+++I+ K KG +  + +  P+
Sbjct: 179 DITITKKE---MDVGLALIKQYSSKFDLSAFKDDYSTELLKIIKAKSKGKRATVKKMKPQ 235

Query: 240 RGNVVNLMDALKASLSQAK 258
           + +  +L + L  SL   K
Sbjct: 236 KASSDDLYEQLMQSLGSKK 254