Pairwise Alignments

Query, 227 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

Subject, 193 a.a., RNA polymerase sigma factor RpoE from Pseudomonas stutzeri RCH2

 Score = 85.5 bits (210), Expect = 6e-22
 Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 5/190 (2%)

Query: 1   MPTAETDLCLNAPPLAQDLARFRAIMQAHNRKLYRIARSILRNDSDAEDVLQEAYVRAFT 60
           M T E D  L       D   F  ++  +  K+  +    + +  +A+DV QEA+++A+ 
Sbjct: 1   MLTQEQDQQLVERVQRGDKRAFDLLVMKYQHKILGLIVRFVHDSHEAQDVAQEAFIKAYR 60

Query: 61  RFEDFRGDAAITTWLARIVINEALGRL-RKGRRQMRLAKYMRQSQEAEII-AFPLNSGIS 118
              +FRGD+A  TWL RI IN A   L  +GRR          S++AE          I 
Sbjct: 61  ALANFRGDSAFYTWLYRIAINTAKNHLVARGRRP---PDSDVSSEDAEFYEGDHALKDIE 117

Query: 119 DPEKTMAQRQILDLVERLTDDLPDTYRTVFVLRVIEGLDNEEAAALLGLKPETARTRLHR 178
            PE+++ + +I D V R    LP+  RT   LR  +GL  E+ A+++     T R+R+ R
Sbjct: 118 SPERSLLRDEIEDTVHRTIQLLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFR 177

Query: 179 ARRILKEQLE 188
           AR  + + L+
Sbjct: 178 AREAIDKALQ 187