Pairwise Alignments

Query, 227 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 82.4 bits (202), Expect = 5e-21
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 7/179 (3%)

Query: 18  DLARFRAIMQAHNRKLYRIARSILRNDSDAEDVLQEAYVRAFTRFEDFRGDAAITTWLAR 77
           D   F  ++  +  K+  +    + N  D  DV QEA+++A+     FRG++A  TWL R
Sbjct: 18  DKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFRGESAFYTWLYR 77

Query: 78  IVINEALGRLRKGRRQMRLAKYMRQSQEAEII-AFPLNSGISDPEKTMAQRQILDLVERL 136
           I +N A   +    R+   +     ++EAE          +S+PE     +++   V   
Sbjct: 78  IAVNTAKNHIVAQSRRPPASDV--DAEEAEFYEGGDALKELSNPENITLSKELKKTVFDA 135

Query: 137 TDDLPDTYRTVFVLRVIEGLDNEEAAALLGLKPETARTRLHRARRILKEQLERQIGPVL 195
            D LPD  +T   LR ++GL  EE A ++     T R+R+ RAR    E +E++I P+L
Sbjct: 136 IDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAR----EAVEKKIKPLL 190