Pairwise Alignments

Query, 227 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

Subject, 186 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 78.2 bits (191), Expect = 1e-19
 Identities = 47/178 (26%), Positives = 94/178 (52%), Gaps = 8/178 (4%)

Query: 18  DLARFRAIMQAHNRKLYRIARSILRNDSDAEDVLQEAYVRAFTRFEDFRGDAAITTWLAR 77
           D   F  ++      ++R+A  +L ++ +A D+ QE +V+ +   + +  +  ++TWL +
Sbjct: 17  DKRAFALLVSEFQPLVFRLAFRLLCDEEEARDITQETFVKVWLSLKTYNQENRLSTWLYK 76

Query: 78  IVINEALGRLRKGRRQMRLAKYMRQSQEAEIIAFPLNSGISDPEKTMAQRQILDLVERLT 137
           I  N    RLR     +R +    +S  ++ +  P +  I   E +++ +Q+ +L+ R T
Sbjct: 77  ITCNTCYDRLRS----LRHSPLDNESAFSDSVNIPSDDHI---EISLSNKQLKELILRYT 129

Query: 138 DDLPDTYRTVFVLRVIEGLDNEEAAALLGLKPETARTRLHRARRILKEQLERQIGPVL 195
           ++LP   + VF LR +E L+  E   + GL PE  ++ L+ AR+ ++ ++  QI P L
Sbjct: 130 NELPPQQKLVFTLRDVEELEVAEVQIITGLSPEKIKSTLYLARKNIRNKM-NQIDPDL 186