Pairwise Alignments

Query, 384 a.a., efflux protein from Sinorhizobium meliloti 1021

Subject, 360 a.a., efflux RND transporter periplasmic adaptor subunit from Pseudomonas fluorescens SBW25-INTG

 Score =  183 bits (464), Expect = 8e-51
 Identities = 117/360 (32%), Positives = 194/360 (53%), Gaps = 9/360 (2%)

Query: 12  VARLLTAILLGAVLSGCSQEKVETKETIRPVKVVEIAAAGEPRELHYSGSVRARTEMNLG 71
           ++  +  + L A+LSGC +EK E K   R V V  +  A     +  +G ++AR + +L 
Sbjct: 5   ISTCIVGLGLLALLSGCGEEKAEPKAHSR-VFVQTVQPADFAAAVTLTGDIQARVQTDLS 63

Query: 72  FRVGGKITERLVNIGDRVKPGDILARIDATDYRLAVTSAEANLLAAEKQVQTTALAKLRA 131
           FRVGGKI +R V++GDRV    +LA++D  D +  V SA+A ++A + +V+ TA A +R 
Sbjct: 64  FRVGGKIIQRTVDVGDRVSAKQVLAKLDPKDLQTNVDSAQAQVVAEQARVKQTAAAFVRQ 123

Query: 132 EQLFTKSFSSQAQLDQATLLYDQAVSTRDAAASSLSQAKNQVSYTDLKADQNGIVTAVNA 191
           E+L  K ++S+++ D A      + S   AA + L+ A+ Q+ YT L A+  G++TA  A
Sbjct: 124 EKLLPKGYTSRSEYDSAQAALRSSQSALAAAQAQLANAREQLGYTSLVAEAPGVITARQA 183

Query: 192 DIGQVVGTGTPVVTVAVDGEKEVEIAVPEIDVTEFKPGKPVGVRFWSNDMLVLDGHVREV 251
           ++GQVV    P+ ++A DGE++    V E  + E  P  P+ V    N  + + G VREV
Sbjct: 184 EVGQVVQATVPIFSLARDGERDAVFNVYESLLVEPPPDAPITVSLLDNPSIKVQGKVREV 243

Query: 252 SGSADQRSRTFSVRV---SLPNDERVLLGMTATVEAAAASSAPLVSIPLSALSKKDGQNI 308
           + +    + T  V++   +LP    +   ++AT    A +S   + +P +AL+K   +  
Sbjct: 244 TPAVAANTGTVQVKIALQALPKGMELGSVVSATANGPAKAS---IELPWAALTKDLSEPA 300

Query: 309 VWIVDRDFSTVHARPIKLADFADNGVRVVDGLGAGDLVVAAGTQFMAEDLKVRL-QAGEQ 367
           VW++D D        + +A +    V + DGL  G+ VV AG Q +   + V + Q G Q
Sbjct: 301 VWLIDGD-GKAQLHKVTVARYLTGKVIIGDGLKGGEKVVVAGGQLLHPGMLVEIAQQGAQ 359