Pairwise Alignments

Query, 311 a.a., CbbX protein from Sinorhizobium meliloti 1021

Subject, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

 Score = 47.0 bits (110), Expect = 2e-09
 Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 40/227 (17%)

Query: 3   MPDAPSNTESLPTSV---------DLAG---EYQASGVAEILDELDR----ELVGLKPVK 46
           +PD     E +P  V         D  G   E + S + E+L E+      ++ GL+ +K
Sbjct: 457 LPDIDLEKEEIPREVLDKIKVTKEDFVGGLKEVEPSALREVLVEVPNIKWSDVGGLEDIK 516

Query: 47  QRIRETAALLLVERAR-RAMGLSHEPPSLHMSFTGNPGTGKTTVALRMANLLHRLGYIRK 105
           Q ++E     +  +     MG+   PP   + F G PGTGKT +A  +AN         +
Sbjct: 517 QDLKEAVEWPIKNKEMFERMGI--RPPKGVLLF-GPPGTGKTLLAKAVAN-------ESE 566

Query: 106 GHLVSVTRDDLVGQYIGHTAPKTKEILKKAMGG---VLFIDEAYYLYRPDNERDYGQEAI 162
            + +SV   ++  +++G +    +EI +KA      V+F DE   +  P    D+G   +
Sbjct: 567 ANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSV-APKRGMDFGSSGV 625

Query: 163 ------EILLQV--MENNRDDLVVILAGYADRMDRFFESNPGFRSRI 201
                 ++L ++  +E  +D +++      D +D+     PG   RI
Sbjct: 626 TEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQAL-LRPGRLDRI 671



 Score = 38.9 bits (89), Expect = 4e-07
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 16/151 (10%)

Query: 38  ELVGLKPVKQRIRETAALLLVERARRAMGLSHEPPSLHMSFTGNPGTGKTTVALRMANLL 97
           ++ GLK   ++IRE   L +         L  EPP   +   G PGTGKT +A  +AN  
Sbjct: 178 DIGGLKEEVKKIREMVELPM-RYPELFDKLGIEPPK-GVLLAGPPGTGKTLLAKAVAN-- 233

Query: 98  HRLGYIRKGHLVSVTRDDLVGQYIGHTAPKTKEILKKA---MGGVLFIDE--AYYLYRPD 152
                    +  ++   +++ +Y+G T    ++I ++A      ++FIDE  A    R +
Sbjct: 234 -----EAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDE 288

Query: 153 NERDYGQEAIEILLQVME--NNRDDLVVILA 181
              +  +  +  LL +M+   +R  LV++ A
Sbjct: 289 ASGEVERRMVAQLLTLMDGLESRGQLVILAA 319