Pairwise Alignments

Query, 324 a.a., hypothetical protein from Sinorhizobium meliloti 1021

Subject, 391 a.a., Cytochrome D1 heme domain. from Pseudomonas stutzeri RCH2

 Score = 50.8 bits (120), Expect = 5e-11
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 3/136 (2%)

Query: 14  LSAGSAEANKVFVSNERGNNITVLDSESWEVIATFPAGNRPRGITISPDGKELYV--CAS 71
           L   +   N+ FV     + + V+DSE W+         +P  +   PD ++++V     
Sbjct: 252 LEGWTVAGNQTFVPAVGQHRVLVMDSEKWQQTDAIDVAGQPIFVMARPDARQIWVNFAHP 311

Query: 72  DDDTVRVFDPETYKELHTLPSGPDPELFALDPSGNPLYIANEDDNLVTVVDVKTRQVLAE 131
           D+  V+V D ET++ +  L  GP          G+ L+++  D   + V D  T ++L  
Sbjct: 312 DNGKVQVIDSETHEIIADLEPGPAVLHMEFTARGDQLWLSVRDGEEIQVWDPYTLKLLKR 371

Query: 132 VPVGVEPEGVAVSPDA 147
           +P    P G+  S  A
Sbjct: 372 LPAH-SPSGIFFSSRA 386



 Score = 44.7 bits (104), Expect = 4e-09
 Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 31/230 (13%)

Query: 6   LAIVSAVLLSAGSAEANKVFVSNERGNNI--TVLDS-ESWEVIATFPAGNRPR-----GI 57
           +A + A  L+ GS  A  V V +  G     ++ D+ E+W  +  F  GN P+     GI
Sbjct: 135 VADIPATPLADGSRNARVVGVIDVPGRRFIYSLFDTDETW--LLDFSQGNEPQITRFEGI 192

Query: 58  -------TISPDGKELYVCASDDDTVRVFD---PETYKEL---------HTLPSGPDPEL 98
                   ++P+G+        +D +   D   PE   E            LP    P L
Sbjct: 193 GRQPYDALLTPEGRYYIAGLFGEDGMAKIDLWHPERGVERILDGYGRGQQKLPVYKMPHL 252

Query: 99  FALDPSGNPLYIANEDDNLVTVVDVKTRQVLAEVPVGVEPEGVAVSPDAKTI-INTSETT 157
                +GN  ++     + V V+D +  Q    + V  +P  V   PDA+ I +N +   
Sbjct: 253 EGWTVAGNQTFVPAVGQHRVLVMDSEKWQQTDAIDVAGQPIFVMARPDARQIWVNFAHPD 312

Query: 158 N-MAHFIDASTYKIVHNVLVDQRPRYAEFTADGKKLYVSAEIGGTVSVID 206
           N     ID+ T++I+ ++       + EFTA G +L++S   G  + V D
Sbjct: 313 NGKVQVIDSETHEIIADLEPGPAVLHMEFTARGDQLWLSVRDGEEIQVWD 362



 Score = 40.8 bits (94), Expect = 6e-08
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 5   ALAIVSAVLLSAGSAEANKVFVSNERGNN--ITVLDSESWEVIATFPAGNRPRGITISPD 62
           A+ +    +      +A +++V+    +N  + V+DSE+ E+IA    G     +  +  
Sbjct: 285 AIDVAGQPIFVMARPDARQIWVNFAHPDNGKVQVIDSETHEIIADLEPGPAVLHMEFTAR 344

Query: 63  GKELYVCASDDDTVRVFDPETYKELHTLPSGPDPELF 99
           G +L++   D + ++V+DP T K L  LP+     +F
Sbjct: 345 GDQLWLSVRDGEEIQVWDPYTLKLLKRLPAHSPSGIF 381



 Score = 32.0 bits (71), Expect = 3e-05
 Identities = 64/303 (21%), Positives = 114/303 (37%), Gaps = 34/303 (11%)

Query: 30  RGNNITVLDSESWEVIATFPAGNRPRGITISPDGKELYVCASDDDTVRVFDPETYKELHT 89
           R   +T +D     +      G    G  IS DG  + V   +   V+VF+  T + +  
Sbjct: 78  RDGGLTKVDLLRQRIDRRVIQGGNSIGGAISQDGTLIAVGNYEPGGVKVFNANTLELVAD 137

Query: 90  LPSGPDPE-------LFALDPSGNPLYIANEDDNLVTVVDV---KTRQVLAEVPVGVEPE 139
           +P+ P  +       +  +D  G     +  D +   ++D       Q+     +G +P 
Sbjct: 138 IPATPLADGSRNARVVGVIDVPGRRFIYSLFDTDETWLLDFSQGNEPQITRFEGIGRQPY 197

Query: 140 GVAVSPDAK-TIINTSETTNMAHFIDASTYKIVHNVL-----------VDQRPRYAEFTA 187
              ++P+ +  I        MA        + V  +L           V + P    +T 
Sbjct: 198 DALLTPEGRYYIAGLFGEDGMAKIDLWHPERGVERILDGYGRGQQKLPVYKMPHLEGWTV 257

Query: 188 DGKKLYVSAEIGGTVSVIDVSAAEPKITKKITFEVPGVLPEWLQPVGVKATKDGSRIFVA 247
            G + +V A     V V+D      K  +    +V G      QP+ V A  D  +I+V 
Sbjct: 258 AGNQTFVPAVGQHRVLVMD----SEKWQQTDAIDVAG------QPIFVMARPDARQIWVN 307

Query: 248 LG-PAN-RVAVIDGKTDEVLDYFLVGQRVWQMAFTPGEEFLITTNGNSNDVSIIDVKAEK 305
              P N +V VID +T E++     G  V  M FT   + L  +  +  ++ + D    K
Sbjct: 308 FAHPDNGKVQVIDSETHEIIADLEPGPAVLHMEFTARGDQLWLSVRDGEEIQVWDPYTLK 367

Query: 306 VIR 308
           +++
Sbjct: 368 LLK 370