Pairwise Alignments

Query, 747 a.a., sensor histidine kinase from Sinorhizobium meliloti 1021

Subject, 961 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  136 bits (343), Expect = 4e-36
 Identities = 113/407 (27%), Positives = 199/407 (48%), Gaps = 21/407 (5%)

Query: 342 RVQERTAELTEANRLLQIHADEQ--TKIEAALRHAKEAAEAAHTSKTRFLAAASHDLLQP 399
           RV ER     +A  +   H D     +IEA LR     A+ A+ +K+RF+++ SH+L  P
Sbjct: 556 RVLERDPVSRKATLVAGTHVDIDGLKRIEAELRQTILDAQVANQAKSRFISSMSHELRTP 615

Query: 400 INAAKLYLSMLTDK--VGQPGTEEVVRRLKRSFTSIESLLQALLDISRLDSSGAEFNVTS 457
           +NA + +  ++  K  V   G  + +  + R+   +  L+  +LD S          +  
Sbjct: 616 LNAIQGFAQLMRMKQDVRPDGNADFLDEILRASRHLNQLVGDILDWSGTQLQSTSVELQM 675

Query: 458 FNLGNLLQGVAEDLAPLATERGIDLRI--VPSSRWVSSDQRYLMRCVQNLVVNAIQYTE- 514
            N+  L+Q  AE +     ERG+ L +    S+  V +D R L + + NL+ NAI+Y + 
Sbjct: 676 VNVSKLMQESAELVRAEVAERGLQLNVDLPESTLQVRADPRRLRQVLLNLLSNAIKYNKP 735

Query: 515 RGRVLVGCRLTGDAVRIEVWDTGVGISEEDRTRIFKEFTRASGA-AKGPGMGLGLSIVER 573
            G+V +  ++    +R+ V DTG+GI+ + + R+F+ F R         G G+GL++ + 
Sbjct: 736 AGQVTLSYQVAAGYIRLLVEDTGLGIASDQQNRVFEPFQRLGRENTMIQGTGIGLALCQE 795

Query: 574 ACRHLDHPIRLASQPGRGSVFSIEVPLAAPGHASVSEDPRMEPMLDGSLDLIVMIVENDA 633
               +   + L S+PG GS F IE+PL        SE P +E ++   L  +  + +N A
Sbjct: 796 LAALMRGRMGLHSEPGIGSSFWIELPLLG------SEAP-LEAVMRQGLPRVFYVEDNPA 848

Query: 634 DELHAMTQVLESWGASVLAADSTADAAALMQEIGTAPDILLVDYQLDDEDNGIETIHTLR 693
            +    T + +      L   ++   +AL Q +   PD++L+D +L  E NG E +  LR
Sbjct: 849 SQFLVRTALAD----IALVEVASNGVSALQQILAAPPDLVLLDLKL-PEMNGEELLSRLR 903

Query: 694 ALAGAE-IPAIIISANRQRQFLQLCNEMSFAVLTKPVQLVRLRALID 739
                + +P +++SA    + L+  +     +L KP+ +  LR LI+
Sbjct: 904 RDVRCQGVPVVVLSAVTGAEALRAASLDCQGLLRKPLDMQELRGLIE 950