Pairwise Alignments

Query, 747 a.a., sensor histidine kinase from Sinorhizobium meliloti 1021

Subject, 565 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  266 bits (679), Expect = 3e-75
 Identities = 169/454 (37%), Positives = 255/454 (56%), Gaps = 37/454 (8%)

Query: 299 QERFRRRDGMSLDIRIHSL--PDDGFIVS--IMDVTAET-------QASALLEQRVQERT 347
           + R RR+DG ++ + ++ L  PD+  +V   + DVT          Q +  LEQRV ERT
Sbjct: 120 ETRLRRKDGSAIYVIMNLLLKPDEDGLVEGFVADVTERKLAQLRLLQLNEELEQRVAERT 179

Query: 348 AELTEANRLLQIHADEQTKIEAALRHAKEAAEAAHTSKTRFLAAASHDLLQPINAAKLYL 407
            EL                     R A++AAEAA+ SK ++LAAASHDLLQP+NAA+L +
Sbjct: 180 CEL---------------------REARDAAEAANLSKDKYLAAASHDLLQPLNAARLLI 218

Query: 408 SMLTDKVGQPGTEEVVRRLKRSFTSIESLLQALLDISRLDSSGAEFNVTSFNLGNLLQGV 467
           S L ++        +V R   +    E LL  LLDIS+LD +  + ++ +++L ++L  +
Sbjct: 219 STLRERQLPQSELHLVERAHLALEGAEDLLTDLLDISKLDQAAIKPDIDAYSLDDILLPL 278

Query: 468 AEDLAPLATERGIDLRIVPSSRWVSSDQRYLMRCVQNLVVNAIQYTERGRVLVGCRLTGD 527
             +  P+A  +G+ L        +S D R L R ++NL+ NA +YT+ G VL+G R  GD
Sbjct: 279 ISEFQPVAAAKGLQLSHYLPRCAISCDFRLLTRILRNLLSNACRYTDAGGVLLGARKRGD 338

Query: 528 AVRIEVWDTGVGISEEDRTRIFKEFTR--ASGAAKGPGMGLGLSIVERACRHLDHPIRLA 585
            +RIEVWDTG GI EED   IF EF +   S AA+  G+GLGL+IV+R    LD+ + + 
Sbjct: 339 MLRIEVWDTGRGIPEEDLHSIFLEFNQLGVSRAAERSGVGLGLAIVDRIANMLDYRVLVR 398

Query: 586 SQPGRGSVFSIEVPLAAPGHASVSEDPRMEPMLDGSL-DLIVMIVENDADELHAMTQVLE 644
           S+PGRGSVFSI+VP+AA      +  P + P L   L    +++++N+   LH+M  +LE
Sbjct: 399 SRPGRGSVFSIDVPMAATVPPRSAVTPVIAPQLGDPLPGRRLLVIDNETSILHSMAALLE 458

Query: 645 SWGASVLAADSTADAAALMQEIGTAPDILLVDYQLDDEDNGIETIHTLRALAGAEIPAII 704
            WG +V+ A     A A +   G APD +L DY LD    G + +  LRA     +P ++
Sbjct: 459 QWGCTVVTATDEQTAIAALG--GVAPDAILADYHLDHGSTGWDVVLALRARFSTRLPVVM 516

Query: 705 ISANRQRQFLQLCNEMSFAVLTKPVQLVRLRALI 738
           I+A+R  Q  +    +   VL KPV+  ++R+++
Sbjct: 517 ITADRSDQCRRQLQGVGVPVLNKPVKPGKMRSVL 550