Pairwise Alignments

Query, 501 a.a., ABC transporter oligopeptide-binding protein from Sinorhizobium meliloti 1021

Subject, 547 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  137 bits (345), Expect = 1e-36
 Identities = 134/501 (26%), Positives = 215/501 (42%), Gaps = 51/501 (10%)

Query: 8   IMGALMLGSA---LAPAFAASGPVKI----VLPEEA--DLLEPCMATRSNIGRIIMQNVS 58
           ++  L LGSA   + P  +A GP ++    V   E   +   P + T         Q + 
Sbjct: 4   LLKRLTLGSAFCCIVPLLSACGPTRVPSGLVYCSEGNPESFNPQLVTSGTTVDATSQQLY 63

Query: 59  ETLTELDVREGKGLMPRLAESWEQKEDGS-WRFNLRTGVKF------SDGTDFNAKDVKY 111
           + L + D R G+ + P LA SW   +D   + F LR  V+F      +   +FNA DV +
Sbjct: 64  DGLVDYDARTGE-MTPSLATSWHLSDDEKVYTFELRQDVQFHRSDIFTPSRNFNADDVLF 122

Query: 112 SFDRVMSDKNA---CESRRY-------FGGMNIKIDVVDDTTVDFTVDPVQP--ILPLLL 159
           SF+R++   N         Y       F  +   I+ +DD  V F +       +  L  
Sbjct: 123 SFNRIIDTDNPYHFVSKSGYPFFQSIGFAELIDDIEKIDDYHVAFHLKHKDASFLSNLAT 182

Query: 160 SLLTIVPEETPMEFVRE---------PVGTGPYKLTDWTPGQQIVLSARDDYWGEKPEVT 210
               I+ +E   +  R           +GTGP++L D+     I       YW   PEV 
Sbjct: 183 GFAVILSKEYADQLQRTGQEELLDKLAIGTGPFRLIDYVKNDFIRYYRNPYYWRLTPEVD 242

Query: 211 EATYLFRADPAVRAAMVQTGEADLS--PSISQTEATNPATDF---SYLDSETVYLRIDHN 265
           +  +        R A + TG+ ++S  P   +        D    S       +   +  
Sbjct: 243 QLVFDITPKSTTRLAKLITGDCNVSALPKAGELPVVIEKEDLEVESLPGFNVAFWAFNTE 302

Query: 266 IEPLNDVRIRRALNLAIDREAFLGTLVPDSAVLATAIVPPPTLGWNPDVKVFPYDPEQAK 325
             P NDVR+RRAL  AID+E  L  +   +A  A  ++PP +  ++ + K+  Y+PE+A+
Sbjct: 303 RIPFNDVRVRRALAHAIDKENILRAVYQKTAEEAVGLLPPLSWAYSANEKMIDYNPEKAR 362

Query: 326 KLIEEAKADGVKVDTPITIIARTANFPNVTEIMEAIQAQLQEVGLKVELKFVEVAEHEVY 385
           +L++EA    + +D     +AR  N PN  +  E IQA L  +G+KV    +   +  V+
Sbjct: 363 ELLDEAGVKNLTIDIWAMPVARIYN-PNAHKTAELIQADLANIGVKVN---IVNYDWSVF 418

Query: 386 YSKPFKEGRGPQLVAAMHDNSKGDPSFSMFFKYDSEGTQSGFS---DPKVDDLI-ARASA 441
             K  + G    L+    DNS  D  F+      S G+ S  S   DP  D ++ A  S 
Sbjct: 419 NQKLSQHGYDSVLIGWNADNSDPDNFFTPILSCASVGSNSNRSRWCDPAFDHILNAAKST 478

Query: 442 AVGDERAKLWSEVIAYVHDEV 462
              ++RA+L+ E   YV ++V
Sbjct: 479 TDREKRARLYQEAEQYVAEQV 499