Pairwise Alignments

Query, 304 a.a., oligopeptide ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

 Score =  175 bits (444), Expect = 1e-48
 Identities = 97/310 (31%), Positives = 174/310 (56%), Gaps = 10/310 (3%)

Query: 1   MLRFIRQRALASLISLIGLIVMVFFLSRMT-GDPAALFLPVEASAEMKEQFRELHGLNDP 59
           ML+FI +R   ++ +++ LI + FFL R   G+P +   P+    E+       +GL+ P
Sbjct: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSSERPLPP--EVMANINAKYGLDKP 58

Query: 60  ILVQFARYVGDVVTGDLGESLR-KARPALDVVLEAFTWT--LWLAVITMTLVTGAAIVVG 116
           +  Q+  Y+ ++V GD G S + K     +++  A   +  + LA    T++ G  + VG
Sbjct: 59  VSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMG--VTVG 116

Query: 117 SLGAFRSGGFFDRLSSMVSLIGASVPDFWLAIVAIVIFSINFAILPTSG--TGSVVHWIL 174
           ++ A +   + D      +++G  +P F LA V I IF+I F++ P  G   G   +  L
Sbjct: 117 TIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEYMAL 176

Query: 175 PIAVLFVRPFGIIVQVVRGSMVSALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVV 234
           P+  + +       ++ RGSM+  L+S +++TARAKG+  G I+  HAL+ A+LPV++ +
Sbjct: 177 PVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYM 236

Query: 235 GDQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTAIAIFLMNVLIDLA 294
           G     ++ G+VV+ETIFG PG+GKL +++   RD+++V+   ++      L N ++D+ 
Sbjct: 237 GPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDIL 296

Query: 295 YALLDPRIRH 304
            A +DP+IR+
Sbjct: 297 LAYIDPKIRY 306