Pairwise Alignments

Query, 304 a.a., oligopeptide ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 313 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  198 bits (503), Expect = 2e-55
 Identities = 106/310 (34%), Positives = 182/310 (58%), Gaps = 9/310 (2%)

Query: 4   FIRQRALASLISLIGLIVMVFFLSRMT-GDPAALFLPVEASAEMKEQFRELHGLNDPILV 62
           F+ +R LA+L  L+ + ++VF + R+  GDPAA  +    +AE   + R   GL+DP+ V
Sbjct: 4   FLLRRVLATLPVLVVVALIVFLMLRLAPGDPAAAIVGATGTAEDIARVRADLGLDDPMPV 63

Query: 63  QFARYVGDVVTGDLGESLRKARPALDVVLEAFTWTLWLAVITMTLVTGAAIVVGSLGAFR 122
           QF R+ G ++ GDLGES    +  + ++ +    TL L+ +T+ +    A+ +G + A+R
Sbjct: 64  QFVRWAGQMLQGDLGESFFMKQTVVALIAQRIEPTLSLSAMTLVMTILIAVPLGVIAAWR 123

Query: 123 SGGFFDRLSSMVSLIGASVPDFWLAIVAIVIFSINFAILPTSG--------TGSVVHWIL 174
            GG+ DR     S++G S+P F +    I +F++++ +LP  G        +  + H I+
Sbjct: 124 HGGWLDRALMGFSVLGFSIPAFVIGYCLIWLFAMHWQMLPVQGYVRFGDDPSRWLRHLIM 183

Query: 175 PIAVLFVRPFGIIVQVVRGSMVSALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVV 234
           P   L +    +I +V R ++  A++  Y++TARAKG+    ++  HAL NA +P++TV+
Sbjct: 184 PAVTLSIIYVALIARVTRAAVAEAMTEDYIRTARAKGISEVRVLMRHALANAAVPIVTVI 243

Query: 235 GDQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTAIAIFLMNVLIDLA 294
           G   A L+ G VV E +F  PG+G+L +D++L RDF ++    L  ++   L+N+ +DL+
Sbjct: 244 GIGVAMLIGGVVVTEAVFAIPGLGQLTVDAVLSRDFPLIQGITLFFSVLYMLINLAVDLS 303

Query: 295 YALLDPRIRH 304
           Y L DPRIR+
Sbjct: 304 YLLFDPRIRY 313