Pairwise Alignments

Query, 304 a.a., oligopeptide ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 325 a.a., oligopeptide/dipeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  178 bits (451), Expect = 2e-49
 Identities = 107/320 (33%), Positives = 168/320 (52%), Gaps = 17/320 (5%)

Query: 1   MLRFIRQRALASLISLIGLIVMVFFLSRMTGDPAALFLPVEASAEMKEQFRELHGLNDPI 60
           M  FI +R   +L+ +  + ++ F +    GDP    + V  S + +E  RE  GLNDP 
Sbjct: 1   MFAFIIRRVAQALLVMFIISLLGFAIKYSFGDPTREMMGVSVSVKEREALREELGLNDPF 60

Query: 61  LVQFARYVGDVVTGDLGESLRKARPALDVVLEAFTWTLWLAVITMTLVTGAAIVVGSLGA 120
            VQ+ R+    + GDLG S    +PALDV+L+    TL L  +   L+   ++ VG   A
Sbjct: 61  AVQWTRFASGALKGDLGISYFYRKPALDVILDKAPATLELVFVAACLIILISVPVGVYAA 120

Query: 121 FRSGGFFDRLSSMVSLIGASVPDFWLAIVAIVIFSINFAILPTSGTGSVVH----W---- 172
            R      RL   VS IG SVP F  AI  I IFS+N   LP+ G G+  H    W    
Sbjct: 121 CRPKDVLSRLFMGVSTIGVSVPVFLTAIFLIYIFSVNLGWLPSFGRGNPEHVIGSWDTNL 180

Query: 173 ---------ILPIAVLFVRPFGIIVQVVRGSMVSALSSAYVKTARAKGVKSGPIIFIHAL 223
                    ILP   L      + ++++R  M   L + YVK ARAKG+K+  +I +HA 
Sbjct: 181 TTWANFKHIILPGISLSSIMLPLFIRLIRAEMKEVLETEYVKFARAKGLKTWRVIMVHAF 240

Query: 224 RNAMLPVITVVGDQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTAIA 283
           +N +LPVITV G Q  +++   ++ ET+F + G+G + ID++ + D ++++A ++     
Sbjct: 241 KNTLLPVITVGGVQLGTMIAFTILTETVFQWQGMGFMFIDAVERADTSLLVAYLIFCGAI 300

Query: 284 IFLMNVLIDLAYALLDPRIR 303
              +N ++D+ Y L++P +R
Sbjct: 301 FVTVNTVVDIVYGLVNPMVR 320