Pairwise Alignments

Query, 548 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 536 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  457 bits (1175), Expect = e-133
 Identities = 254/534 (47%), Positives = 359/534 (67%), Gaps = 19/534 (3%)

Query: 3   EHLLEVRNLSVEFHTAAGVVHAVKSISYHLDKGETLAILGESGSGKSVSSSAIMNLIDMP 62
           ++L+EVR+L+VEF         V+ +S+ + +GETLA++GESGSGKSV++ +I+ L+  P
Sbjct: 4   DNLIEVRDLAVEFIVGERRQRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYP 63

Query: 63  PGRISSGEILLDGRDLLTMPAEERREVNGRRVAMIFQDPLSHLNPVYSVGWQISEAMTTH 122
                +G I   G++LL +  +  R + G R+AMIFQ+P++ LNP++S+  QI+E +  H
Sbjct: 64  LAHHPTGTIQYAGQNLLGLKEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEVLGIH 123

Query: 123 -GLAGSKAREEALRLLRRVGIPEPERAMRKYPHEFSGGQRQRVMIAMALALRPDLLIADE 181
            GL+G  A    L LL  VGIPEP + ++  PHE SGGQRQRVMIAMALA  P+LLIADE
Sbjct: 124 KGLSGKVATRRTLELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADE 183

Query: 182 PTTALDVTVQAEVLKLLKELQRETGMAVLIITHDLGVVSEIADRVVVMEKGAIVEAGTVR 241
           PTTALDVTVQ ++L+LLK+LQ   GM++L+I+HDL +V  IA RV VM++G IVE  +  
Sbjct: 184 PTTALDVTVQLKILELLKQLQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQASCE 243

Query: 242 EIYKNPQHPYTQKLIAAAP-GKGAMHEPGARAEPLLSVRDV-----------RKTYGSFE 289
           E+++ PQHPYT++L+ A P G  A +  G    PLL V D+           ++T    +
Sbjct: 244 ELFRAPQHPYTRELLGAEPSGTPASNVVG---PPLLQVEDLKVWFPIKKGLFKRTVDYIK 300

Query: 290 ALKGISFDLMPGETMAVVGESGSGKSTLARALLRLDEPDSGTALWKGRDLFALSPAELYK 349
           A+ GI F L  G+T+ +VGESGSGKSTL  A+LRL     G   ++G+ L +L+  ++  
Sbjct: 301 AVDGIRFSLPQGQTLGIVGESGSGKSTLGLAILRLIGSQGGIR-FEGKQLDSLTQQQVRP 359

Query: 350 LRRDLQMVFQDPTQSLNPRMTVYQLISEAWVIHPDILPKAKWRERVAELLVQVGLSAEHM 409
           LRR++Q+VFQDP  SL+PRM V Q++ E   IH  I  +A+  + +   L +VGL  E  
Sbjct: 360 LRREMQVVFQDPFGSLSPRMCVSQIVGEGLRIH-KIGTEAEQEQAIIAALKEVGLDPETR 418

Query: 410 SRYPHQFSGGQRQRIAIARALALEPQLIICDEAVSALDVSVQAQVIELLDRLRREMGIAF 469
           +RYPH+FSGGQRQRIAIARAL L+P LI+ DE  SALD +VQ QV+ELL  L+ +  + +
Sbjct: 419 NRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQTKYNLTY 478

Query: 470 IFIAHDLPVVRDFADYVMVMQQGEVVELGTVREVFDTPRQAYTRALL-AASLSP 522
           +FI+HDL VV+  +  +MV++ G+VVE G  R +F  P+  YT+ LL AA L+P
Sbjct: 479 LFISHDLAVVKALSHQLMVVKHGQVVEQGDARSIFAAPQHPYTQQLLEAAFLAP 532



 Score =  180 bits (457), Expect = 1e-49
 Identities = 109/262 (41%), Positives = 159/262 (60%), Gaps = 13/262 (4%)

Query: 275 LLSVRDVRKTYGSFE----ALKGISFDLMPGETMAVVGESGSGKSTLARALLRL-----D 325
           L+ VRD+   +   E     ++G+SFD+  GET+A+VGESGSGKS  A ++LRL      
Sbjct: 6   LIEVRDLAVEFIVGERRQRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYPLA 65

Query: 326 EPDSGTALWKGRDLFALSPAELYKLRRD-LQMVFQDPTQSLNPRMTVYQLISEAWVIHPD 384
              +GT  + G++L  L    +  +R + + M+FQ+P  SLNP  ++ + I+E   IH  
Sbjct: 66  HHPTGTIQYAGQNLLGLKEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEVLGIHKG 125

Query: 385 ILPKAKWRERVAELLVQVGLSAEH--MSRYPHQFSGGQRQRIAIARALALEPQLIICDEA 442
           +  K   R R  ELL  VG+   H  +   PH+ SGGQRQR+ IA ALA EP+L+I DE 
Sbjct: 126 LSGKVATR-RTLELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADEP 184

Query: 443 VSALDVSVQAQVIELLDRLRREMGIAFIFIAHDLPVVRDFADYVMVMQQGEVVELGTVRE 502
            +ALDV+VQ +++ELL +L+  +G++ + I+HDL +VR  A  V VMQ+G +VE  +  E
Sbjct: 185 TTALDVTVQLKILELLKQLQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQASCEE 244

Query: 503 VFDTPRQAYTRALLAASLSPDP 524
           +F  P+  YTR LL A  S  P
Sbjct: 245 LFRAPQHPYTRELLGAEPSGTP 266