Pairwise Alignments

Query, 546 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 530 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  428 bits (1100), Expect = e-124
 Identities = 234/529 (44%), Positives = 343/529 (64%), Gaps = 12/529 (2%)

Query: 5   HLLEVKDLTVDFLSLGGAFRATSGVSFHVDAGETLVILGESGSGKSVSASAIMGLIDTPP 64
           +L+E++DL+V F            +   +  GE L ++GESGSGKSV+A +I+ L+    
Sbjct: 10  NLIEIRDLSVAFNDQ----TVVRNLCLDIRPGECLALVGESGSGKSVTAHSILQLLPENE 65

Query: 65  GDICAGSVAYRGRDLSSLSEGERRDLNGRRIAMIFQDPLSHLNPVYTIGWQLEEVFTVHG 124
               +GS+ YRG++L        R+L G RIAMIFQ+P++ LNP++++  Q+ E   +H 
Sbjct: 66  AHT-SGSIRYRGQELVGADTQALRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETLMLHK 124

Query: 125 VASGAEARQRAIEILGRVGIPEPEKRIDQYPHQFSGGQRQRIMIGMAIALRPEILIADEP 184
              G  ARQR +E+L  VGI  P +R+  YPHQ SGGQRQR++I MA+A  PE+LIADEP
Sbjct: 125 GLGGKAARQRILELLTLVGIQNPVERLKAYPHQLSGGQRQRVIIAMALACEPELLIADEP 184

Query: 185 TTALDVSVQAQILELLKKLQAEDGLAIIMITHDLEVAANMADRVIVMKSGRIVEEGEARA 244
           TTALDV+VQ +IL LLK LQ   G+++++I+HDL +  ++A RV VMK+G IVE+     
Sbjct: 185 TTALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAPCET 244

Query: 245 VFENPAHSYTRTLINALPHADDRAPPRPARPAGKPILEVKNIDKFYTLSSGFFAKPARLH 304
           +F  P H Y+  L++A P  +  A PR  R   + +L+V+++   + LS G F +   L 
Sbjct: 245 LFSAPKHPYSCELLHAEPEGE--ALPRDDR---EEVLQVQDLRVSFPLSGGLFRRKEYLR 299

Query: 305 AVKNLSFDVAAGETIGIVGESGSGKSTVARVLLGLNEASGGEALFHGRDVLKMDRKQLLA 364
           AV  +S  +  G+T+GIVGESGSGKST+ + +L L E S G   F G+ +  + +K L  
Sbjct: 300 AVDGISLSIQRGKTLGIVGESGSGKSTLGQAILRLIE-SEGSIRFQGQALDHLSQKALRP 358

Query: 365 FRRKVQMVFQDPYSSMNPRMTVFDIVSEPWRIHKDILEKTRWRDRVTELLGLVGLNPEHA 424
           +R+++Q+VFQDP+ S++PRM+V  I+SE   +H+      +   RV + L  VGL+P   
Sbjct: 359 WRKQMQVVFQDPFGSLSPRMSVQQIISEGLEVHQP-SSPEQCEARVIQALKEVGLDPATR 417

Query: 425 KRYPHQFSGGQRQRIAIARALACDPELVVCDEAVSALDVSVQVQVIDLLAELRDRLGLAY 484
            RYPH+FSGGQRQRIAIARAL   P L++ DE  SALD +VQ QV+ LL +L+ +  L Y
Sbjct: 418 HRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQKQVVALLRQLQQKYDLTY 477

Query: 485 IFITHDLPIVRHFADRIIVMKSGEIVEHATTEEIFRNPQHAYTRQLINA 533
           +FI+HDL +VR  A  +IV+K G++VE   + ++F +PQH YT++L+ A
Sbjct: 478 LFISHDLAVVRALAHDMIVIKDGKVVEQGASHDVFDSPQHPYTKELLAA 526



 Score =  195 bits (496), Expect = 3e-54
 Identities = 109/238 (45%), Positives = 157/238 (65%), Gaps = 8/238 (3%)

Query: 306 VKNLSFDVAAGETIGIVGESGSGKSTVARVLLGL---NEA-SGGEALFHGRDVLKMDRKQ 361
           V+NL  D+  GE + +VGESGSGKS  A  +L L   NEA + G   + G++++  D + 
Sbjct: 27  VRNLCLDIRPGECLALVGESGSGKSVTAHSILQLLPENEAHTSGSIRYRGQELVGADTQA 86

Query: 362 LLAFR-RKVQMVFQDPYSSMNPRMTVFDIVSEPWRIHKDILEKTRWRDRVTELLGLVGL- 419
           L   R  ++ M+FQ+P +S+NP  +V   + E   +HK +  K   R R+ ELL LVG+ 
Sbjct: 87  LRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETLMLHKGLGGKAA-RQRILELLTLVGIQ 145

Query: 420 NP-EHAKRYPHQFSGGQRQRIAIARALACDPELVVCDEAVSALDVSVQVQVIDLLAELRD 478
           NP E  K YPHQ SGGQRQR+ IA ALAC+PEL++ DE  +ALDV+VQ +++ LL  L+ 
Sbjct: 146 NPVERLKAYPHQLSGGQRQRVIIAMALACEPELLIADEPTTALDVTVQRKILLLLKSLQQ 205

Query: 479 RLGLAYIFITHDLPIVRHFADRIIVMKSGEIVEHATTEEIFRNPQHAYTRQLINATPK 536
           RLG++ + I+HDL +VR  A R+ VMK+GEIVE A  E +F  P+H Y+ +L++A P+
Sbjct: 206 RLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAPCETLFSAPKHPYSCELLHAEPE 263