Pairwise Alignments

Query, 307 a.a., peptide ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 325 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  191 bits (484), Expect = 3e-53
 Identities = 108/324 (33%), Positives = 172/324 (53%), Gaps = 17/324 (5%)

Query: 1   MFAFILRRAGQSLIAVIGLLVLVFFLSRLTGDPAYLYLPLDSSEAQRQAFSETHGFNDPL 60
           MFAFI+RR  Q+L+ +  +  + F + +  GDP    + +  S  +R+A  E  G NDP 
Sbjct: 1   MFAFIVRRVAQALLVMFIISFIGFAIKQSVGDPTREMVGVSVSVKEREALREKLGLNDPY 60

Query: 61  VVQFGRYLVDLARFDFGDALSRNRPAMEVALEAFPQTLKLAVIAIVLSLCFAVVVGSLAA 120
           +VQ+ R+  +  + D G +    +PA++V L   P TL+L  +A  + +  +V VG  +A
Sbjct: 61  LVQWARFTKNAVQGDLGTSYFYRKPALDVILAKAPATLELVFVAQCIIVLISVPVGVYSA 120

Query: 121 ARPNSLFDKIASTASLAGASAPDFWVAIVAILVFSVGLGLLPTSGTGTAL---------- 170
            RP S+  ++    S+ G S P F  AI  I +FSV LG LP+ G G  +          
Sbjct: 121 CRPRSVLSRLFMGISIVGVSVPVFLTAIFMIYIFSVHLGWLPSFGRGNPVEIFPGWTSVL 180

Query: 171 -------HWIMPIFVLTLRPFGLLVQVVRGTMMGALASPYVKTARAKGVNRSRIVFRHAL 223
                  H I+P   L+     L ++++R  M  AL + YVK ARAKG+   R+V  HA 
Sbjct: 181 TTWSNFKHIILPSIALSSIMLPLFIRLIRAEMKEALETEYVKFARAKGLPEWRVVMVHAF 240

Query: 224 RNSLLPVITVAGDLAASLVNGAVVVETIFGWPGIGKLMIDAIVRRDFALIQATVLVTAIA 283
           +N+LLPVITV G     ++   ++ ET+F W G+G + ++A+ R D AL+ A ++     
Sbjct: 241 KNTLLPVITVGGVQLGIMIAFTILTETVFQWQGMGFMFVEAVERADTALLVAYLIFVGAI 300

Query: 284 IFVLNIAIDLVYARLDPRIRFETR 307
              +N  +DL+Y  ++P +R   R
Sbjct: 301 FVTVNTVVDLIYGFVNPMVRIAGR 324