Pairwise Alignments

Query, 307 a.a., peptide ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 325 a.a., oligopeptide/dipeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  189 bits (480), Expect = 7e-53
 Identities = 110/324 (33%), Positives = 169/324 (52%), Gaps = 17/324 (5%)

Query: 1   MFAFILRRAGQSLIAVIGLLVLVFFLSRLTGDPAYLYLPLDSSEAQRQAFSETHGFNDPL 60
           MFAFI+RR  Q+L+ +  + +L F +    GDP    + +  S  +R+A  E  G NDP 
Sbjct: 1   MFAFIIRRVAQALLVMFIISLLGFAIKYSFGDPTREMMGVSVSVKEREALREELGLNDPF 60

Query: 61  VVQFGRYLVDLARFDFGDALSRNRPAMEVALEAFPQTLKLAVIAIVLSLCFAVVVGSLAA 120
            VQ+ R+     + D G +    +PA++V L+  P TL+L  +A  L +  +V VG  AA
Sbjct: 61  AVQWTRFASGALKGDLGISYFYRKPALDVILDKAPATLELVFVAACLIILISVPVGVYAA 120

Query: 121 ARPNSLFDKIASTASLAGASAPDFWVAIVAILVFSVGLGLLPTSGTGTALH----W---- 172
            RP  +  ++    S  G S P F  AI  I +FSV LG LP+ G G   H    W    
Sbjct: 121 CRPKDVLSRLFMGVSTIGVSVPVFLTAIFLIYIFSVNLGWLPSFGRGNPEHVIGSWDTNL 180

Query: 173 ---------IMPIFVLTLRPFGLLVQVVRGTMMGALASPYVKTARAKGVNRSRIVFRHAL 223
                    I+P   L+     L ++++R  M   L + YVK ARAKG+   R++  HA 
Sbjct: 181 TTWANFKHIILPGISLSSIMLPLFIRLIRAEMKEVLETEYVKFARAKGLKTWRVIMVHAF 240

Query: 224 RNSLLPVITVAGDLAASLVNGAVVVETIFGWPGIGKLMIDAIVRRDFALIQATVLVTAIA 283
           +N+LLPVITV G    +++   ++ ET+F W G+G + IDA+ R D +L+ A ++     
Sbjct: 241 KNTLLPVITVGGVQLGTMIAFTILTETVFQWQGMGFMFIDAVERADTSLLVAYLIFCGAI 300

Query: 284 IFVLNIAIDLVYARLDPRIRFETR 307
              +N  +D+VY  ++P +R   R
Sbjct: 301 FVTVNTVVDIVYGLVNPMVRIAGR 324