Pairwise Alignments

Query, 627 a.a., acetoin catabolism regulatory protein from Sinorhizobium meliloti 1021

Subject, 602 a.a., sigma-54 dependent transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  308 bits (790), Expect = 3e-88
 Identities = 218/606 (35%), Positives = 310/606 (51%), Gaps = 81/606 (13%)

Query: 52  ETRLREHRQQSEDLIAIARSGLENLF-RQVAGQNYVLLLSDREGVTVEFLGDPLFGNSLR 110
           + R   HRQ    LIA+  S    LF R +A  +  L+LSD EG  +   G   + + L 
Sbjct: 37  DERCERHRQ----LIALVESEALPLFTRLMAHTDSRLILSDAEGFVLRHWGLSRYSDRLA 92

Query: 111 KAGLYLGSEWSEWRAGTCAVGACLETGEALTIHQTDHFDNTHTPLSCTAAPIYDIQGELS 170
              L  G  W E   GT A+G  L   EAL++    HF   H  +SCTA+PI+   GEL 
Sbjct: 93  NVALDCGVNWLEEHKGTNAIGTALRAKEALSVVGEQHFCRPHRFMSCTASPIFSPSGELI 152

Query: 171 AVLDISLLSSPILKASQNLALHLVSATVRRIELANLMAQARNQWVLRFSRSPEFLDVDPE 230
             LDI+   S  LK +Q   L L+S+  +++E A L +    ++ +  + S + L    +
Sbjct: 153 GALDIT---SERLKHNQQTLL-LISSLAQQVETALLCSLPGGRFRVDLAASRQLLSSGWQ 208

Query: 231 AAISIDGLGRIAGMTHAGAKILARST---------GLDWRDPQQ--LIGEPVSRFFDIEV 279
             +  D  GR+ G+     + L  ++         G DWR  Q   L GE       +  
Sbjct: 209 GILIADDEGRLLGLNPMARQYLGGASPGMQLGELLGDDWRAQQAQCLRGE-----LHLAT 263

Query: 280 DNLSDLTRRRPTRERLVFARDGNALFAHAIEPHSKVRAPLVSREQIPPALRRLGGDAPVI 339
             +          E  ++ +   A   H ++P                    L    P +
Sbjct: 264 SAIG---------EGALWIQTNKASSLHGVKP--------------------LRFHDPQL 294

Query: 340 AALQAKAAKLARTRLPILIQGETGTGKEHLARAIHEGSGLEGPFVAINCAAIPEQLIESE 399
                +A K+   ++P+L+QGETG GKEH  R +++ S L+G  VA+NCAA+P +LIE+E
Sbjct: 295 ETAWQQARKVVSRKIPLLVQGETGVGKEHFVRQLYQDSRLDGELVAVNCAALPTELIEAE 354

Query: 400 LFGYLPGAFTGASAKGRKGLIEQADGGTLFLDEIGDMPLALQSRLLRVLAEGEVLPVGGT 459
           LFGY  GAFTGAS +G  G + QADGG LFLDEIG++PLA Q RLLRVL E EV PVGG 
Sbjct: 355 LFGYQGGAFTGASRQGHLGKVRQADGGFLFLDEIGELPLAAQGRLLRVLQEREVTPVGGL 414

Query: 460 APRKVRIRIVSASHRPLQTLVSQGAFREDLYYRLNAATLTLPALRDRPDFDWVLEQLLKR 519
              +V I++V+A+H  L  +V  G FREDLY+RLN   ++LP LR R D   ++ +L ++
Sbjct: 415 KSHRVDIQVVAATHMDLAEMVRDGRFREDLYFRLNGLQVSLPPLRQRADKSRLIHKLHRQ 474

Query: 520 H-----GDGELILSPAALSALKAHDWPGNIRELDNVIGVAAALAEN----GVVELGDLPD 570
           +     GD E  L P  L+ L+A+ WPGN+RELDN++ VA  +AE         L D   
Sbjct: 475 YRVNPPGD-EQRLCPQLLALLEAYAWPGNLRELDNLMQVACLMAEGERELSQAHLSDAHR 533

Query: 571 QLLANAD-------TVGGNEASATLSL----------TLTACNWNISEAARRLGLDRSTV 613
           + L  A            +++SA  SL          TL  C+ NISEAARRLG+ R+ +
Sbjct: 534 RALMQARPFYSGRMNSESSQSSAESSLKAELDGRIQNTLADCDGNISEAARRLGVSRNLI 593

Query: 614 HRQIKR 619
           +R +KR
Sbjct: 594 YRSLKR 599