Pairwise Alignments

Query, 627 a.a., acetoin catabolism regulatory protein from Sinorhizobium meliloti 1021

Subject, 616 a.a., sigma-54 dependent transcriptional regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  300 bits (769), Expect = 9e-86
 Identities = 205/601 (34%), Positives = 306/601 (50%), Gaps = 59/601 (9%)

Query: 55  LREHRQQSEDLIAIARSGLENLFRQVAGQ-NYVLLLSDREGVTVEFLGDPLFGNSLRKAG 113
           L+   +Q + LI + +S    LF Q+  Q N  LLLSD +G  ++  G   + + L    
Sbjct: 42  LKHKHEQYQQLIELVQSHALPLFNQLMAQSNSRLLLSDADGYVLKHWGVSRYSSKLADVA 101

Query: 114 LYLGSEWSEWRAGTCAVGACLETGEALTIHQTDHFDNTHTPLSCTAAPIYDIQGELSAVL 173
           L +G  W E   GT A+G  L   +A+++    HF   +  +SCTA PI+  QGE+  VL
Sbjct: 102 LDIGVNWLEQYKGTNAIGTALMAKQAVSVVGEQHFIRQNRFMSCTACPIFSPQGEMLGVL 161

Query: 174 DISLLSSPILKASQNLALHLVSATVRRIELANLMAQARNQWVLRFSRSPEFLDVDPEAAI 233
           DI+   S   + SQ   L LVS+  +++E A L     + + +  +  P  L    +  +
Sbjct: 162 DIT---SEQQRHSQQ-TLMLVSSLAQQVETALLCHLPDSHYRIDLAAEPSLLSSGWQGIV 217

Query: 234 SIDGLGRIAGMTHAGAKILARSTGLDWRDPQQLIGEPVSRFFDIEVDNLSDLTRRRPTRE 293
             D  GRI G      ++L+          Q  +G+       +E+      TR      
Sbjct: 218 IADSEGRIVGCNPMAKQLLS----------QAKLGD------SLELHLGDSWTRAGGFHR 261

Query: 294 RLVFARDGNALFAHAIEPHSKVRAPLVSREQIPPALRRLGGDAPVIAALQAKAAKLARTR 353
            L       AL        +K    +  + Q    +R      P++     +A K+   +
Sbjct: 262 DLALHLHTQALGV----TQTKSAKTIQDKPQSQLGVRFRD---PLLERAWQQANKVITKQ 314

Query: 354 LPILIQGETGTGKEHLARAIHEGSGLEG-PFVAINCAAIPEQLIESELFGYLPGAFTGAS 412
           +P+L+ GETG GKE   + +H  S     P VA+NCAA+P +L+ESELFGY  GAFTGA+
Sbjct: 315 IPLLVLGETGVGKEQFVKKLHAQSSRRAQPLVAVNCAALPAELVESELFGYQAGAFTGAN 374

Query: 413 AKGRKGLIEQADGGTLFLDEIGDMPLALQSRLLRVLAEGEVLPVGGTAPRKVRIRIVSAS 472
             G  G I QA GG LFLDEIG+MP A QSRLLRVL E EV+PVG     KV I+I++A+
Sbjct: 375 RSGFIGKIRQAHGGFLFLDEIGEMPQAAQSRLLRVLQEREVVPVGSNQSVKVDIQIIAAT 434

Query: 473 HRPLQTLVSQGAFREDLYYRLNAATLTLPALRDRPDFDWVLEQLLKRHGDGELILSPAAL 532
           H  L++LV+QG FR+DL+YRLN   + LPALR+R D + ++ +L +RH  G   L    L
Sbjct: 435 HMDLESLVAQGLFRQDLFYRLNGLQVRLPALRERQDIERIIHKLHRRHRSGPQTLCTELL 494

Query: 533 SALKAHDWPGNIRELDNVIGVAAALAENG-VVELGDLPDQLL------------------ 573
             L  +DWPGN+RELDN++ VA  +AE+  V+    LP+ L                   
Sbjct: 495 GQLMRYDWPGNLRELDNLMQVACLMAEDDEVLARAHLPEHLAKKLVNKPLAVYERQHVEN 554

Query: 574 ----ANADTVGGNEASA-------TLSLTLTACNWNISEAARRLGLDRSTVHRQIKRYRL 622
                + D +G + A +        +     AC  N+S+ A+RLG+ R+ ++R++K+  +
Sbjct: 555 PQNPRDKDDIGRHSADSLHGAINQNVLQAYRACEGNVSQCAKRLGISRNALYRKLKQLGI 614

Query: 623 K 623
           K
Sbjct: 615 K 615