Pairwise Alignments

Query, 320 a.a., ribosomal large subunit pseudouridine synthase B from Sinorhizobium meliloti 1021

Subject, 262 a.a., pseudouridine synthase from Rhodanobacter denitrificans MT42

 Score =  230 bits (587), Expect = 2e-65
 Identities = 130/257 (50%), Positives = 164/257 (63%), Gaps = 2/257 (0%)

Query: 63  RPTAKRRVGDEKAGELPGKRVTLARALSKLGYCSRTQAEKLIAEGRVSVAGRKITDLSHW 122
           RP   R V    + + P  R  LAR LSKLG CSR+QAE+ I  GRVSV GR + D    
Sbjct: 3   RPPPSRAVPSAASAQPP--RHGLARVLSKLGACSRSQAEQWIRAGRVSVDGRVVRDPYQP 60

Query: 123 VDIEADRIAVDGTVIAAQARVYLMLNKPRGLVTTRDDPEGRPTVFSCLDNVDVPSLSPVG 182
             I+  ++AVDG  + +   VY+  NKPRGLV +  D  GR TV++ L    +P L PVG
Sbjct: 61  TLIDRQQVAVDGQPVKSAEYVYVAFNKPRGLVVSAADEHGRATVYTALAAAGLPWLGPVG 120

Query: 183 RLDKASEGLLLFTNDTVLAQRLLDPETHLGKVYHVQVRGIFGEAMAARMVEGVTEGGELL 242
           RLDKASEGLLL +NDT  A  + DP THL K YHVQV G    A+ A M+ G+ EGG+LL
Sbjct: 121 RLDKASEGLLLLSNDTTWAAGITDPATHLDKTYHVQVAGQPDAAVLAAMLTGIHEGGDLL 180

Query: 243 RALRVERLKGGDRNSWIEIELDEGRNRQIRRMLDVLGFECLRLLRVSIGEIRLGDLPKGA 302
           +A RV  L+ G++N+W+E+ LDEGRNR IRR+L  LGF+ LRL+RV+IG + LG+L KG 
Sbjct: 181 KARRVTLLRAGEKNAWLEVVLDEGRNRHIRRLLAALGFDVLRLIRVAIGPLVLGELVKGQ 240

Query: 303 SRPLTEAEALYLRRRTG 319
            R L   E   L  R G
Sbjct: 241 WRRLGADEVGALDARKG 257