Pairwise Alignments

Query, 320 a.a., ribosomal large subunit pseudouridine synthase B from Sinorhizobium meliloti 1021

Subject, 322 a.a., RNA-binding S4 domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  152 bits (384), Expect = 1e-41
 Identities = 105/245 (42%), Positives = 143/245 (58%), Gaps = 12/245 (4%)

Query: 79  PGKRVTLARALSKLGYCSRTQAEKLIAEGRVSVAGRKITDLSHWVDIEADRIAVDGTVIA 138
           PG R+  A+ L++ G  SR +AE+LIAEGRV+V G+ +   +  V  EAD+I  DGT IA
Sbjct: 8   PGDRI--AKVLARAGIASRREAERLIAEGRVAVNGKTVDSPALNVT-EADKITFDGTPIA 64

Query: 139 AQARVYLM-LNKPRGLVTTRDDPEGRPTVFSCLDNVDVPSLSPVGRLDKASEGLLLFTND 197
                 L   +KP GLVTT  D +GR TVF  L   D+P +  VGRLD  SEGLLL TND
Sbjct: 65  EPEPPRLWRYHKPVGLVTTAKDEKGRETVFDALP-ADLPRVMSVGRLDLNSEGLLLLTND 123

Query: 198 TVLAQRLLDPETHLGKVYHVQVRGIFGEAMAARMVEGVTEGGELLRAL--RVERLKGGDR 255
             + +RL  P T   + Y V+V+G   E   A +  G+   GE  + +  R++RL+G   
Sbjct: 124 GEIKRRLELPTTGWLRRYRVRVKGAPTEDDLAPLRAGIEVEGERFKPMEARLDRLQGA-- 181

Query: 256 NSWIEIELDEGRNRQIRRMLDVLGFECLRLLRVSIGEIRLGDLPKGASRPLTEAEALYLR 315
           N+W+ + L EGRNR+IRR +  LG    RL+R+S G  RLG+L  G    + E +   LR
Sbjct: 182 NAWLTLGLREGRNREIRRAMGALGLVVNRLIRISYGPFRLGELKPG---EVEEIKGRILR 238

Query: 316 RRTGL 320
            + GL
Sbjct: 239 EQLGL 243