Pairwise Alignments

Query, 355 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 655 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Pseudomonas fluorescens FW300-N2E2

 Score = 58.2 bits (139), Expect = 6e-13
 Identities = 76/263 (28%), Positives = 110/263 (41%), Gaps = 20/263 (7%)

Query: 2   ASSAHGKPTKKAAPSSAAKKAGGFPLPVSTAPMEARSATELPGGDAWQYEPKWDGFRCLA 61
           A S   + +   + ++ A+KA    LP   +P  A    E P G+ W+YE ++ G+R LA
Sbjct: 4   AESESARLSNAKSEATTARKAPQNRLPERLSPQLATPVEEPPTGE-WRYEVQFHGYRLLA 62

Query: 62  FKSGDEVDIRAKSGKPLGRFFPEIVALLRRLEPDMFVLDGELV-IEVDGRLSFDALQMRL 120
                EV +  ++ +            L         LDGELV ++  GR  F AL+   
Sbjct: 63  RIEQGEVRLFNRNHQDWTERLKLHADALAGWNLGDSWLDGELVLLDETGRSDFAALRQAF 122

Query: 121 HPAASRVQKLSQETPAKLILFD--MLAGTDGTILTGEPLQTRRACLEAFAKKNAVAEMLE 178
                    +S+       LFD   L G D   L   P++ RRA L+     NA   +  
Sbjct: 123 --------DISRTVDMLYFLFDAPFLNGVD---LRQAPVEERRAALKKALGNNASKRLRF 171

Query: 179 SSPFTLDIKEAERWLTSWEAGATDGVVAKRRDGVYECGERA-MVKVK-RLKTADCVVGGF 236
           S  F+    +      S  A A D VV KR    Y     A  VK+K RL+ A  +VG  
Sbjct: 172 SESFSASPHD---MFESAIALALDSVVGKRVGSPYRSQRSADWVKLKCRLRQAFVIVGFT 228

Query: 237 RYESDSSLVGSLLLGLYDTEGLL 259
           R +   S  G+LLL +    GL+
Sbjct: 229 RPQGRRSGFGALLLAVNGPSGLV 251