Pairwise Alignments

Query, 355 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 562 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) LigC from Pseudomonas fluorescens FW300-N2E2

 Score = 55.8 bits (133), Expect = 3e-12
 Identities = 83/354 (23%), Positives = 142/354 (40%), Gaps = 47/354 (13%)

Query: 23  GGFPLP-----VSTAPMEARSATELPGGDAWQYEPKWDGFRCLAFKSGDEVDIRAKSGKP 77
           GG P P       +AP+E       P  D WQ E KWDG R    K    + + ++    
Sbjct: 206 GGQPYPFFLAHALSAPVEQFDTLLGPASD-WQVEWKWDGIRAQVIKRDGHLWVWSRGEDL 264

Query: 78  LGRFFPEIVALLRRLEPDMFVLDGELVI-EVDGRLSFDA------LQMRLHPAASRVQKL 130
           +   FPE+ +L + L PD  V+DGE+V+ +    ++ DA      LQ  + P     Q++
Sbjct: 265 VTERFPELHSLAQAL-PDGTVIDGEIVVWKAPQSVTEDAFDPDAPLQPAVQPFVLLQQRI 323

Query: 131 SQETPAKLILFDM--------LAGTDGTILTGEPLQTRRACLEAFAKKNAVAEMLESSPF 182
            ++T  K IL D         L    G      P   RR  +EA   +     +L S   
Sbjct: 324 GRKTLGKKILDDAPVVVMAYDLLEWQGEDWRSRPQAERREQVEALIARVRSPVLLPSPTV 383

Query: 183 T-LDIKEAERWLTSWEAGATDGVVAKRRDGVYECGERAMVKVKRLKTADCVVGGFRYESD 241
           T  D  +  R          +G++ K R+ +Y  G          +T D  V  ++++ D
Sbjct: 384 TGQDWFDLARQREGSRRLGVEGMMLKARNALYGVG----------RTKDMGV-WWKWKVD 432

Query: 242 SSLVGSLLLGLYDTEGLLNHVGFTATISDKERPALTNQLEALREPPGFTG-------KAP 294
              V ++L+      G    +    T +  + P  + +   +     ++G       +  
Sbjct: 433 PFSVDAVLIYAQRGHGRRASLYSDYTFAVWDNPPDSRERTLVPFAKAYSGLTDAEMRQVD 492

Query: 295 GGPSRWSSERSGEWEPVRPELVVEVRFDHVS-NRRFRHG-----TKLMRWRPDK 342
               + + E+ G    V P LV E+ F+ ++ + R + G      +++RWR DK
Sbjct: 493 NIVRKTTVEKFGPVSSVTPTLVFELGFEGIALSNRHKSGIAVRFPRMLRWRQDK 546