Pairwise Alignments

Query, 355 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 878 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Pseudomonas fluorescens FW300-N2E2

 Score = 70.9 bits (172), Expect = 1e-16
 Identities = 96/373 (25%), Positives = 140/373 (37%), Gaps = 47/373 (12%)

Query: 2   ASSAHGKPTKKAAPSSAAKK-------AGGFPLPVSTAPMEARSATELPGGDAWQYEPKW 54
           A+ A  +P K   P S  +        A   PLP +  P  A      P G+ W YE K+
Sbjct: 197 AAKAVKQPEKAVRPKSPKRPSKTTLSGAVAGPLPDTLKPELATLVESAPDGE-WLYEIKF 255

Query: 55  DGFRCLAFKSGDEVDIRAKSGKPLGRFFPEIVALLRRLEPDMFVLDGELVIEVD-GRLSF 113
           DG+R +A     +V +  ++G       P     L  L  +   LDGE+V+  D G   F
Sbjct: 256 DGYRVMARIENGDVRLLTRNGHDWTHKLPSQAEALAALGLESAWLDGEMVVANDQGVPDF 315

Query: 114 DALQMRLHPAASRVQKLSQETPAKLILFDMLAGTDGTILTGEPLQTRRACLEAFAKKNAV 173
            ALQ      +S              LFD +   +G  L   P+Q RRA L A  + N  
Sbjct: 316 QALQNAFEAGSS--------GKIAYYLFD-VPYLNGMDLRNVPVQERRAALAAVLESNES 366

Query: 174 AEMLESSPFTLDIKEAERWLTSWEAGATDGVVAKRRDGVY-ECGERAMVKVKRLKTADCV 232
             +  S  F    +  E  L S      +G++ KR    Y        +K+K     + V
Sbjct: 367 PLLRFSDAFE---ENPEALLNSACQMQMEGLIGKRIGSTYVSRRSNDWIKLKCKNRQEFV 423

Query: 233 VGGFRYESDS-SLVGSLLLGLYDTE-GLLNHVGFTAT---------ISDKERPALTNQLE 281
           V GF     + S  G+LLLGL+D + G L + G   T         I  +  P  T +  
Sbjct: 424 VVGFSEPKGARSAFGALLLGLHDADSGQLRYAGKVGTGFNETTLKSIYQQLLPLETKKAA 483

Query: 282 ALREPPGFTGKAPGGPSRWSSERSGEWEPVRPELVVEVRFDHVSNRRFRHGTKLMRWRPD 341
            +  P G+  K       W          + P+L+ EV F  ++             R D
Sbjct: 484 VVNPPTGYEAKG----VHW----------LEPKLLAEVAFAEMTKDGSVRHAVFHGLRDD 529

Query: 342 KDPRQCTYQQIMP 354
           K  +  T +   P
Sbjct: 530 KPAKDITQELAKP 542