Pairwise Alignments

Query, 709 a.a., signal transduction protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 986 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  373 bits (958), Expect = e-107
 Identities = 204/450 (45%), Positives = 288/450 (64%), Gaps = 13/450 (2%)

Query: 243 TPLRMSGT------NMDLTERKESEARIYQLAYYDVLTGLANRTLLMERLKAAIALCERS 296
           TPL   G       ++++TE  E++ R+  LA++D LTGL NR L  ERLKAA+A+ +R 
Sbjct: 255 TPLEARGNRGAVVMHLNVTETVEAQQRLTHLAHFDSLTGLPNRLLFRERLKAALAMVQRQ 314

Query: 297 KQIGALLIIDLDNFKILNDTMGHDVGDALLKMVADRLLQAVRRCELVARLGGDEFVIVME 356
               A++ IDLD FK++NDT+GH  GDALL+ VA R+   +R  + V RLGGDEF +++ 
Sbjct: 315 GGRLAVMFIDLDRFKVVNDTLGHLAGDALLQQVAARIGGCLRASDTVGRLGGDEFAVLVP 374

Query: 357 NLGIDERGAALKAKSVGQKVRGLLNDPFMLAGKQLRTSPSIGIALFAEGRPGLEELLKQA 416
           +    ER   +    V +++   L  P  L G++L  S SIGI L+ +    LE+L++ A
Sbjct: 375 D---PEREYDVTV--VARRLVDTLAQPITLEGQELFVSASIGITLYPDDCDDLEKLIRNA 429

Query: 417 DVAMYQAKEAGKNALRFFDPAMQAAVEERVALENDLRNGVLENEFRLFCQPQVDAC-GRL 475
           D AMY+AKE G+N  +FF  AM A V+E++ LE DLR  V   EF L  QP+V    G +
Sbjct: 430 DTAMYRAKELGRNNFQFFTAAMNARVKEQLQLETDLRRAVQRQEFILHFQPKVSCSHGGI 489

Query: 476 CGGEVLIRWQHPVRGLVMPNQFIPLAEQTDLIIPIGEWVLRKTCETLVEWESHPSLAQIS 535
            G E L+RWQHPVRGLV P +FIPL E+T LI+P+G WVL++ C+    W       Q++
Sbjct: 490 TGFEALLRWQHPVRGLVSPMEFIPLLEETGLIVPVGTWVLQQACQQAAAWHL-AGHGQLT 548

Query: 536 LSVNVSVNQVRDHNFVERVLAIIDDCGANPARIMLELTESLMAENVEEIILKMNALRVRG 595
           ++VN+S  Q++    V+ V   ++D G  P  + LELTESL+  +VE+ I  +N L+  G
Sbjct: 549 VAVNLSARQLQSEALVQDVRQALEDSGLPPQALELELTESLLMSHVEDNIALLNRLKAMG 608

Query: 596 VRFSVDDFGTGYSSLSYLKRFPLSELKIDQSFVREIALNQHDAVITEIIITLAKKLGLGV 655
           V+ SVDDFGTGYSSL+YLKR PL  +K+D++FV++I  +  DA IT  +IT+A  L L V
Sbjct: 609 VQLSVDDFGTGYSSLAYLKRLPLDTVKVDRAFVQDITADPGDASITRAVITMAHNLRLKV 668

Query: 656 LAEGVETEDQLNFLLAHDCSYFQGYLFGKP 685
           +AEGVETE Q+  L+A+ C   QGY F +P
Sbjct: 669 VAEGVETEGQIALLVANHCDEMQGYYFSRP 698



 Score = 33.5 bits (75), Expect = 5e-05
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 134 LKASEERLNLMLQGANDAAWDWDLR-QHTVYYSPRWWQMIGREPDELEPTEDLWVKLLHP 192
           L+  E R   +     ++ W  D+  +  VY +P +    G   ++L      W++ +HP
Sbjct: 21  LRQGENRFVQLADNIPESFWLIDIAARRVVYANPAYATHWGGSVEDLYRNRFDWLRFIHP 80

Query: 193 DDYQKVMDKMNGLFDRSGPSSFDTEFRLQTKSGSYLPVLCRGVILRGADGTPLRMSGTNM 252
           DD    +D+M     R+     +   R+   +G    +  R   ++   G    + G   
Sbjct: 81  DD----LDRMREAVRRNPRGGVNEVVRIVHPNGGERWLHIRSFDMKDEQGNAHSVGGVGT 136

Query: 253 DLTE 256
           D+T+
Sbjct: 137 DITD 140