Pairwise Alignments

Query, 709 a.a., signal transduction protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 1158 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  386 bits (992), Expect = e-111
 Identities = 239/597 (40%), Positives = 339/597 (56%), Gaps = 17/597 (2%)

Query: 90   HRPVAKDVAWVLCNAFPSIGEDGEVLQVITCFTDISALKHAEEALKASEERLNLMLQGAN 149
            HR  + +V  V  ++ P +     +L  I    DI+A + AEE L+ S +    + +GA+
Sbjct: 564  HRLASGEVREVEVHSGPVLLRGRRLLYSI--IHDITARRRAEEQLRLSAK----VFEGAS 617

Query: 150  DAAWDWDLRQHTVYYSPRWWQMIGREPDELEPTEDLWVKLLHPDDYQKVMDKMNGLFDRS 209
            +     D     +  +  + ++ G    E++  +    ++L+   +       N      
Sbjct: 618  EGIVICDRNNRIMSVNRAFVEITGYAEAEVQGRDP---RVLNSGRHDAAFFA-NLWHHLK 673

Query: 210  GPSSFDTEFRLQTKSGSYLPVLCRGVILRGADGTPLRMSGTNMDLTERKESEARIYQLAY 269
               ++  E   + K G   P       +R   G          D++ERK +E  I  LA 
Sbjct: 674  TAGTWQGEIWNRRKGGEVYPEWLSITTVRDEAGEVSNYVAVFADVSERKRNEEHIRFLAE 733

Query: 270  YDVLTGLANRTLLMERLKAAIALCERSKQIGALLIIDLDNFKILNDTMGHDVGDALLKMV 329
            +D LTGL NR+LL +RL+ AIAL ER+ +  AL+ IDLD FK +ND++GH VGD LL+ V
Sbjct: 734  HDYLTGLPNRSLLHDRLQQAIALAERNSESLALMFIDLDRFKNINDSLGHQVGDQLLQEV 793

Query: 330  ADRLLQAVRRCELVARLGGDEFVIVMENLGIDERGAALKAKSVGQKVRGLLNDPFMLAGK 389
              R+   VR  + V+R GGDEF+I++ ++   +  A      V +K+   LN P+ L G 
Sbjct: 794  GRRIQACVRSADTVSRPGGDEFIILLPSIETPQDAAR-----VAEKLLESLNRPYQLGGH 848

Query: 390  QLRTSPSIGIALFAEGRPGLEELLKQADVAMYQAKEAGKNALRFFDPAMQAAVEERVALE 449
            +L  + SIGIA+F E     + L+K AD AMY +KEAG+++  FF P M A V ER++LE
Sbjct: 849  ELVITASIGIAVFPEDGRDFQTLVKNADAAMYYSKEAGRDSFHFFTPDMNARVFERLSLE 908

Query: 450  NDLRNGVLENEFRLFCQPQVDA-CGRLCGGEVLIRWQHPVRGLVMPNQFIPLAEQTDLII 508
            N LR  +   EF L+ QPQVD   GR+ G E LIRWQHP  GLV P +FIP+AE + LI+
Sbjct: 909  NSLRRALERQEFLLYYQPQVDMPSGRVIGFEALIRWQHPQMGLVSPARFIPVAEDSGLIV 968

Query: 509  PIGEWVLRKTCETLVEWESHPSLAQISLSVNVSVNQVRDHNFVERVLAIIDDCGANPARI 568
            PIGEWVL + C     W+    +  + ++VN+S  Q R   F   V   + + G  PA +
Sbjct: 969  PIGEWVLGEACRQNRAWQEQ-GMPAVPVAVNISALQFRQPQFEASVERALAESGLEPAWL 1027

Query: 569  MLELTESLMAENVEEIILKMNALRVRGVRFSVDDFGTGYSSLSYLKRFPLSELKIDQSFV 628
             LELTES+M    +     ++ L+ RGVR S+DDFGTGYSSL+YLKR PL +LKIDQ+FV
Sbjct: 1028 ELELTESMMLHQGQGATDLLDRLKARGVRLSIDDFGTGYSSLAYLKRLPLDKLKIDQAFV 1087

Query: 629  REIALNQHDAVITEIIITLAKKLGLGVLAEGVETEDQLNFLLAHDCSYFQGYLFGKP 685
            R+IA +   A IT  II +A  LGL V+AEGVETE QL FL AHDC+  QG+ F +P
Sbjct: 1088 RDIASDAGGAAITATIIQMAHNLGLSVIAEGVETEAQLEFLQAHDCASAQGFYFARP 1144



 Score = 27.3 bits (59), Expect = 0.004
 Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 27  ILYANDRASEILGLSTAQMLGKVDIDPAWRFDFPDGTPMSLADYPVNRVLKCKEGVWGMI 86
           ++ AN     + G+S    LG+  +       +P  TP   AD+         +G     
Sbjct: 384 LIQANRAFERLFGVSLETALGQTVVGY-----YP--TPEEFADFGQQLYPAVADGRVAHF 436

Query: 87  LKVHRPVAKDVAWVLCNAFPSIGEDGEVLQVITCFTDISALKHAEEALKASEERLNLMLQ 146
           L+  R     + W    A   I        +I    D+   +H EE L+ SEER   M +
Sbjct: 437 LRRFRRADGTLFWANFYA-RQIDAQQPQRGIIIVIEDVDQARHQEEVLRESEERYRQMFE 495