Pairwise Alignments

Query, 709 a.a., signal transduction protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 874 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  383 bits (984), Expect = e-110
 Identities = 253/701 (36%), Positives = 362/701 (51%), Gaps = 60/701 (8%)

Query: 10  LIEYIPVGIVVHGPQSEILYANDRASEILGLSTAQMLGKVDIDPAWRFDFPDGTPMSLAD 69
           L+E+ P GI+ +  +  I Y+N + + I+G+   ++    D+D A   D           
Sbjct: 210 LLEFCPTGIIHYDTELHITYSNQQFANIIGVPLERLQ---DLDMAKLQD----------Q 256

Query: 70  YPVNRVLKCKEGVWGMILKVHRP-VAKDVAWVLCNAFPSIGEDGEVLQVITCFTDISALK 128
            P+  +    EG  G     +R  ++    WV   A P + + G++L  I    D +  K
Sbjct: 257 RPLPALAAVLEGRTGRFEGEYRASLSGRQLWVSLVAAPVLDQGGQLLGGIAIVEDATERK 316

Query: 129 HAEEALKASEERLNLMLQGANDAAWDWDLRQHTVYYSPRWWQMIGREPDE---------- 178
            AE  L+    +L+  ++ +       D      Y +P++ +  G   +E          
Sbjct: 317 RAELQLR----QLSRAVEQSPATIVITDTNGVIEYVNPKFTRTTGYSAEEAVGLKPSVLK 372

Query: 179 -----LEPTEDLWVKLLHPDDYQKVMDKMNGLFDRSGPSSFDTEFRLQTKSGSYLPVLCR 233
                LE  ++LW  +     ++ V         R+G         L  +  +  P+   
Sbjct: 373 SGETPLEVYQELWSTIASGGQWEGVFHNRR----RNG--------ELYWEHATISPITDD 420

Query: 234 GVILRGADGTPLRMSGTNMDLTERKESEARIYQLAYYDVLTGLANRTLLMERLKAAIALC 293
              +               D+TE++  E RI+QLAY+D LTGL NRTLL +R+   +A  
Sbjct: 421 NQRIT-------HFVAVKEDITEKRRQEDRIHQLAYFDELTGLPNRTLLHDRVSQCLAAA 473

Query: 294 ERSKQIGALLIIDLDNFKILNDTMGHDVGDALLKMVADRLLQAVRRCELVARLGGDEFVI 353
           ER ++  ALL IDLDNFK +ND++GH  GD LL+ VA RL   VR  + V+RLGGDEFV+
Sbjct: 474 EREQETLALLFIDLDNFKTVNDSLGHFTGDRLLQSVAQRLKGCVRDSDTVSRLGGDEFVV 533

Query: 354 VMENLGIDERGAALKAKSVGQKVRGLLNDPFMLAGKQLRTSPSIGIALFAEGRPGLEELL 413
           V+ +  +D       A  V +K+   +  PF++ G QL  +PSIGI+LF       + LL
Sbjct: 534 VLADAQLDG------ASQVARKIIDRVGQPFVIDGHQLTVTPSIGISLFPHDARDFQSLL 587

Query: 414 KQADVAMYQAKEAGKNALRFFDPAMQAAVEERVALENDLRNGVLENEFRLFCQPQVD-AC 472
           K AD AMYQAKE+G+NA +FF   M     ER+ LEN LR  V   EF L  QPQVD   
Sbjct: 588 KNADTAMYQAKESGRNAYQFFTAEMNVLAFERLVLENALRQAVERQEFVLHYQPQVDMGS 647

Query: 473 GRLCGGEVLIRWQHPVRGLVMPNQFIPLAEQTDLIIPIGEWVLRKTCETLVEWESHPSLA 532
           GR+ G E L+RW HP  G+V P +FIP+AE + LI  IG+WVL + C     W+    L 
Sbjct: 648 GRVIGAEALVRWLHPELGMVPPARFIPVAEDSGLIGAIGDWVLYEACRQNRAWQE-AGLP 706

Query: 533 QISLSVNVSVNQVRDHNFVERVLAIIDDCGANPARIMLELTESLMAENVEEIILKMNALR 592
            I ++VN+S  Q+R     E V  ++   G     + LELTE  + E+ E  +  +  L 
Sbjct: 707 AIPVAVNLSAVQLRQSELHESVAELLRRTGLESRYLELELTERTVMEDAEATVRCLRRLD 766

Query: 593 VRGVRFSVDDFGTGYSSLSYLKRFPLSELKIDQSFVREIALNQHDAVITEIIITLAKKLG 652
             GV  S+DDFGTGYSSLSYLKRFP+ +LKIDQSFVR+I  +  D  I   II++   L 
Sbjct: 767 EMGVMLSIDDFGTGYSSLSYLKRFPIDKLKIDQSFVRDIVADADDQAIAVAIISMGHSLR 826

Query: 653 LGVLAEGVETEDQLNFLLAHDCSYFQGYLFGKPCAIELFAS 693
           L V+AEGVET +QL  L  H C   QG+ FG+P   + FA+
Sbjct: 827 LRVIAEGVETAEQLEILHRHGCDEAQGFHFGRPMPADEFAA 867



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 8/144 (5%)

Query: 125 SALKHAEEALKASEERLNLMLQGANDAAWDWDLRQHTVYYSPRWWQMIGREPDELEPTED 184
           +AL+ ++  L + EER   +L+        +D   H  Y + ++  +IG     LE  +D
Sbjct: 191 AALRQSQAQLHSLEERYLRLLEFCPTGIIHYDTELHITYSNQQFANIIG---VPLERLQD 247

Query: 185 LWVKLLHPDDYQKVMDKMNGLFDRSGPSSFDTEFRLQTKSGSYLPVLCRGVILRGADGTP 244
           L +  L   D + +      L  R+G   F+ E+R  + SG  L V      +    G  
Sbjct: 248 LDMAKL--QDQRPLPALAAVLEGRTG--RFEGEYR-ASLSGRQLWVSLVAAPVLDQGGQL 302

Query: 245 LRMSGTNMDLTERKESEARIYQLA 268
           L       D TERK +E ++ QL+
Sbjct: 303 LGGIAIVEDATERKRAELQLRQLS 326