Pairwise Alignments

Query, 709 a.a., signal transduction protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  361 bits (926), Expect = e-103
 Identities = 228/611 (37%), Positives = 337/611 (55%), Gaps = 29/611 (4%)

Query: 95  KDVAWVL-CNAFPSIGEDGEVLQVITCFTDISALKHAEEALKASEERLNLMLQGANDAAW 153
           +D+ W+L      S   +   L++   +TDI+  K  EE+LK S     L+   +++A  
Sbjct: 406 RDIRWILDTGKVVSRDANNNALRMCGTYTDITEAKLIEESLKLSA----LVYDNSSEAMS 461

Query: 154 DWDLRQHTVYYSPRWWQMIGREPDEL--EPTEDLWVKLLHPDDYQKVMDKMNGLFDRSGP 211
             D     +  +  +  + G    E+  +    ++  L   + YQ++ D +    +  G 
Sbjct: 462 VLDENGVIITVNAAFTDITGYSESEIRGQHIRMMYCDLNGHEFYQQMNDDIRNKGEWQG- 520

Query: 212 SSFDTEFRLQTKSGSYLPVLCRGVILRGADGTPLRMSGTNMDLTERKESEARIYQLAYYD 271
                E R + ++     +      ++  DG P R      D+T++K+SE  I++ A YD
Sbjct: 521 -----EMRQRRRNNEEYVIWLTINTIKDKDGLPHRRVALFSDITDKKQSEHLIWKQANYD 575

Query: 272 VLTGLANRTLLMERLKAAIALCERSKQIGALLIIDLDNFKILNDTMGHDVGDALLKMVAD 331
            LTGL NR +L+E L A I   +R++   AL+ +DLD FK +NDT+GH +GD LL   A 
Sbjct: 576 TLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYFKEVNDTLGHAMGDLLLIETAS 635

Query: 332 RLLQAVRRCELVARLGGDEFVIVMENLGIDERGAALKAKSVGQKVRGLLNDPFMLAGKQL 391
           RL   VR  ++VARLGGDEF +V+ ++  D +G    A+ + +++     +P+ L  +  
Sbjct: 636 RLKSCVRDADVVARLGGDEFTVVLSSMA-DHKGIERVAEHILRRIA----EPYYLGEETT 690

Query: 392 RTSPSIGIALFAEGRPGLEELLKQADVAMYQAKEAGKNALRFFDPAMQAAVEERVALEND 451
             S SIGI L+ +  P +E LLK AD AMY AK+ G+N   +F P+MQ   + R+ L +D
Sbjct: 691 HISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFTPSMQEYAKYRMRLIHD 750

Query: 452 LRNGVLENEFRLFCQPQVD-ACGRLCGGEVLIRWQHPVRGLVMPNQFIPLAEQTDLIIPI 510
           LR  VL  EF L  QP V  A G +   E L+RW HP RG V P +FIP+AE T LI+ I
Sbjct: 751 LRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGSVSPAEFIPVAEDTGLIVEI 810

Query: 511 GEWVLRKTCETLVEWESHPSLAQISLSVNVSVNQVRD-----HNFVERVLAIIDDCGANP 565
           G WV  +      +W     + +I +SVN S  Q RD     HN++E +L  +D  GA  
Sbjct: 811 GNWVFEQAARQSAQWRKTLGV-EIQISVNKSPIQFRDEGALLHNWLE-LLQQLDVTGAG- 867

Query: 566 ARIMLELTESLMAENVEEIILKMNALRVRGVRFSVDDFGTGYSSLSYLKRFPLSELKIDQ 625
             + +E+TE L+ +    +  K+ A R  GV+ S+DDFGTGYSSL+YLK+F +  LKIDQ
Sbjct: 868 --VCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKFDIDYLKIDQ 925

Query: 626 SFVREIALNQHDAVITEIIITLAKKLGLGVLAEGVETEDQLNFLLAHDCSYFQGYLFGKP 685
           SF R I  +++D  + E II +A KLG+ V+AEGVETE Q   LL   C Y QGYLF KP
Sbjct: 926 SFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLRAGCDYGQGYLFSKP 985

Query: 686 CAIELFASSFM 696
            +   FAS ++
Sbjct: 986 VSASEFASKYL 996



 Score = 69.7 bits (169), Expect = 7e-16
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 4/160 (2%)

Query: 113 EVLQVITCFTDISALKHAEEALKASEERLNLMLQGANDAAWDWDLRQHTVYYSPRWWQMI 172
           +VL VI+ + D++A   A+  + AS E+L L+L  ++   WDWD+R   +  + R   ++
Sbjct: 295 QVLLVISGYLDVTAQTLADREVLASREQLELVLSSSDLGVWDWDIRNDHIERNTRSADIL 354

Query: 173 GREPDELEPTEDLWVKLLHPDDYQKVMDKMNGLFDRSGPSSFDTEFRLQTKSGSYLPVLC 232
           G + D L      W+  +  +D  +V+  +     R        E+RL+T +     +L 
Sbjct: 355 GCDIDMLNANSRQWMDSIVAEDRPQVLQSIEAHI-RGETPQHKMEYRLKTLNRDIRWILD 413

Query: 233 RG-VILRGADGTPLRMSGTNMDLTERK--ESEARIYQLAY 269
            G V+ R A+   LRM GT  D+TE K  E   ++  L Y
Sbjct: 414 TGKVVSRDANNNALRMCGTYTDITEAKLIEESLKLSALVY 453