Pairwise Alignments

Query, 709 a.a., signal transduction protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 721 a.a., diguanylate cyclase from Herbaspirillum seropedicae SmR1

 Score =  357 bits (915), Expect = e-102
 Identities = 213/604 (35%), Positives = 341/604 (56%), Gaps = 21/604 (3%)

Query: 97  VAWVLCNAFPSIGEDGEVLQVITCFTDISALKHAEEALKASEERLNLMLQGANDAAWDWD 156
           V WV          +G+V  +     D++  K A +AL+ +E R   + + A +  +   
Sbjct: 117 VRWVWERGVGIYNANGQVEAIEGFLQDVTERKEAAQALQEAERRYRSIFENAIEGVFQTT 176

Query: 157 LRQHTVYYSPRWWQMIG-REPDEL-----EPTEDLWVKLLHPDDYQKVMDKMNGLFDRSG 210
                +  +P   ++ G   P++L     + +  L+V+     ++ ++M++   +     
Sbjct: 177 PDGTYIAVNPALARIYGYHSPEDLIVGLRDISHQLYVEPERRQEFMRLMEEQGSV----- 231

Query: 211 PSSFDTEFRLQTKSGSYLPVLCRGVILRGADGTPLRMSGTNMDLTERKESEARIYQLAYY 270
            S+F++  R+  + G  + +      +    G      GT   +TERK  EA +   A +
Sbjct: 232 -SNFES--RVYRRDGEIIWISENARAVYDEAGKLSCYEGTVEAITERKAHEAEMRHQATH 288

Query: 271 DVLTGLANRTLLMERLKAAIALCERSKQIGALLIIDLDNFKILNDTMGHDVGDALLKMVA 330
           D LTGL NR +L E L+ A+ +  +   + A+  +DLD FK +ND++GH VGD LLK VA
Sbjct: 289 DALTGLPNRNMLHEHLQRALRVARQKGALTAVAFVDLDQFKFINDSLGHQVGDELLKTVA 348

Query: 331 DRLLQAVRRCELVARLGGDEFVIVMENLGIDERGAALKAKSVGQKVRGLLNDPFMLAGKQ 390
            RL   +R  ++VAR GGDEFV+V++N    E G A     V Q++   +  P+    ++
Sbjct: 349 QRLQACLREADMVARQGGDEFVLVLQNQTEGEAGIA----EVMQRILAAVARPWQAGDRE 404

Query: 391 LRTSPSIGIALFAEGRPGLEELLKQADVAMYQAKEAGKNALRFFDPAMQAAVEERVALEN 450
            + + SIG++ +      +E LLK AD AMY+AKE G+N  +FF P M + V  R+ +  
Sbjct: 405 FQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQGRNNFQFFAPWMDSQVSNRLEMLI 464

Query: 451 DLRNGVLENEFRLFCQPQVDAC-GRLCGGEVLIRWQHPVRGLVMPNQFIPLAEQTDLIIP 509
           +LR  + ++EF+L+ QP++    GRL G E LIRW+ P +G+V P++FIP AE+  LI+P
Sbjct: 465 NLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWESPQQGMVPPDRFIPFAEEAGLIVP 524

Query: 510 IGEWVLRKTCETLVEWESHPSLAQISLSVNVSVNQVRDHNFVERVLAIIDDCGANPARIM 569
           IGEWVLR  C     W+    L  I ++VN+S  Q+ + +  + V  ++   G   + + 
Sbjct: 525 IGEWVLRTACRQNQAWQQ-AGLPPIPVAVNLSPRQL-NQSLPDFVAGVLAQSGLAASWLE 582

Query: 570 LELTESLMAENVEEIILKMNALRVRGVRFSVDDFGTGYSSLSYLKRFPLSELKIDQSFVR 629
           LE+TE+++ ++ E+ +  ++AL+  G++ SVDDFGTGYSSLSYL+RFP+  LKID+SFVR
Sbjct: 583 LEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLSYLRRFPVDALKIDKSFVR 642

Query: 630 EIALNQHDAVITEIIITLAKKLGLGVLAEGVETEDQLNFLLAHDCSYFQGYLFGKPCAIE 689
           +I  +   A I + II+LA  L L V+AEGVE E+Q  FL  + C   QGY FGKP  + 
Sbjct: 643 DIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHAFLKENACDEVQGYYFGKPMEVA 702

Query: 690 LFAS 693
           +F +
Sbjct: 703 VFTA 706



 Score = 35.0 bits (79), Expect = 1e-05
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 9/113 (7%)

Query: 149 NDAAWDWDLRQHTVYYSPRWWQMIGREPDELEPTEDL-WVKLLHPDDYQKVMDKMNGLFD 207
           +DA W  +      + S     + G  P++L   + L +++L HP+D   V + ++    
Sbjct: 46  DDAQWTME------FVSEGCLALTGYLPEDLLLNQRLSFLELTHPEDRTLVRNHVDACMR 99

Query: 208 RSGPSSFDTEFRLQTKSGSYLPVLCRGVILRGADGTPLRMSGTNMDLTERKES 260
                  D E+R+    G+   V  RGV +  A+G    + G   D+TERKE+
Sbjct: 100 ER--RRIDIEYRIVRADGAVRWVWERGVGIYNANGQVEAIEGFLQDVTERKEA 150