Pairwise Alignments

Query, 709 a.a., signal transduction protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 1036 a.a., diguanylate phosphodiesterase from Herbaspirillum seropedicae SmR1

 Score =  473 bits (1217), Expect = e-137
 Identities = 273/612 (44%), Positives = 373/612 (60%), Gaps = 29/612 (4%)

Query: 91   RPVAKD--VAWVLCNAFPSIGEDGEVLQVITCFTDISALKHAEEALKAS----EERLNLM 144
            R V KD  V W+  +  P     G      T   DI+  K  E  L+ S    + R  ++
Sbjct: 429  RCVRKDGSVFWLALSCAPIHDAQGRFTGFRTSSRDITDRKQIEAELRISAVAFDSREGML 488

Query: 145  LQGANDAAWDWDLRQHTVY-----YSPRWWQMIGREPDELEPTEDLWVKLLHPDDYQKVM 199
            +  AN       LR +  +     YS    +++G+ P+ L            P  +Q++ 
Sbjct: 489  ITDANSKI----LRVNKAFTEITGYSAE--EIVGKHPNLLRSDRH------GPAFFQEMR 536

Query: 200  DKMNGLFDRSGPSSFDTEFRLQTKSGSYLPVLCRGVILRGADGTPLRMSGTNMDLTERKE 259
            + +       G      E   + K+G   P       ++  D        T+ D+++RK 
Sbjct: 537  ESIRRFGKWQG------EIWDRRKNGEVYPEWLTISAVKNKDQQVTHYVSTHHDISDRKL 590

Query: 260  SEARIYQLAYYDVLTGLANRTLLMERLKAAIALCERSKQIGALLIIDLDNFKILNDTMGH 319
            +E RI +LA++D LT L NRTLL++RLK AIAL  R+K   ALL IDLD+FK LNDT+GH
Sbjct: 591  AEERIRELAFFDALTRLPNRTLLLDRLKQAIALSLRTKTCAALLFIDLDHFKTLNDTIGH 650

Query: 320  DVGDALLKMVADRLLQAVRRCELVARLGGDEFVIVMENLGIDERGAALKAKSVGQKVRGL 379
            + GD LLK VA RLL  VR  + VAR+GGDEFV+V+E L   ++ AA + +++G+K+   
Sbjct: 651  EKGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVLEGLNELQQEAATQTRAIGEKILTA 710

Query: 380  LNDPFMLAGKQLRTSPSIGIALFAEGRPGLEELLKQADVAMYQAKEAGKNALRFFDPAMQ 439
            L   + L   + RT+ SIG  +F      ++EL+KQAD+AMY+AKE G+NALRFFDPAMQ
Sbjct: 711  LGSTYQLDDVEYRTTASIGATVFLGRAASVDELMKQADLAMYKAKETGRNALRFFDPAMQ 770

Query: 440  AAVEERVALENDLRNGVLENEFRLFCQPQVDACGRLCGGEVLIRWQHPVRGLVMPNQFIP 499
             AV ER  LE  LR  +  N+  L  QPQV   GR+ G EVL+RWQHP RG+V P  FIP
Sbjct: 771  TAVLERATLEAGLRKAIDGNQLLLHYQPQVVEGGRVTGAEVLVRWQHPQRGMVPPGDFIP 830

Query: 500  LAEQTDLIIPIGEWVLRKTCETLVEWESHPSLAQISLSVNVSVNQVRDHNFVERVLAIID 559
            LAE+T LI+ +G WVL   C  L  W + P +A +S++VNVS  Q+R+ +FV+ VL  I+
Sbjct: 831  LAEETGLILSLGNWVLETACRQLATWAAQPQMADLSIAVNVSAPQLREPDFVQTVLDTIE 890

Query: 560  DCGANPARIMLELTESLMAENVEEIILKMNALRVRGVRFSVDDFGTGYSSLSYLKRFPLS 619
              GANP R+ LELTESL+ +NVE+II KM AL+  GV FS+DDFGTGYSSLSYLKR PL+
Sbjct: 891  RTGANPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLKRLPLN 950

Query: 620  ELKIDQSFVREIALNQHDAVITEIIITLAKKLGLGVLAEGVETEDQLNFLLAHDCSYFQG 679
            +LKIDQSFVR++ ++ +DA I + I+ LA+ LGLGV+AEGVET+ Q +FL    C  +QG
Sbjct: 951  QLKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGCHAYQG 1010

Query: 680  YLFGKPCAIELF 691
            Y F +P  +E F
Sbjct: 1011 YFFCRPVTVEAF 1022



 Score = 34.3 bits (77), Expect = 3e-05
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 4/132 (3%)

Query: 134 LKASEERLNLMLQ-GANDAAWDWDLRQHTVYYSPRWWQMIGREPDELEPTEDLWVKLLHP 192
           L+ASEE+   +     N   W W L     + +       G   +E    +D    + HP
Sbjct: 346 LRASEEQFRAIADCTVNWEVW-WGLDGRPRWINHAVLDYTGYTVEECLAMDDFIGTIAHP 404

Query: 193 DDYQKVMDKMNGLFDRSGPSSFDTEFRLQTKSGSYLPVLCRGVILRGADGTPLRMSGTNM 252
           +D  ++  ++    D  G    D E R   K GS   +      +  A G       ++ 
Sbjct: 405 EDEPRIRAELARCMD--GQKREDVELRCVRKDGSVFWLALSCAPIHDAQGRFTGFRTSSR 462

Query: 253 DLTERKESEARI 264
           D+T+RK+ EA +
Sbjct: 463 DITDRKQIEAEL 474