Pairwise Alignments

Query, 709 a.a., signal transduction protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 1505 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  342 bits (878), Expect = 6e-98
 Identities = 195/441 (44%), Positives = 263/441 (59%), Gaps = 14/441 (3%)

Query: 253  DLTERKESEARIYQLAYYDVLTGLANRTLLMERLKAAIALCERSKQIGALLIIDLDNFKI 312
            D+TERK++E  +  LA +D LTGL NRTL  +RL  AI+   RS  I ALL +DLD FK 
Sbjct: 1064 DITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKH 1123

Query: 313  LNDTMGHDVGDALLKMVADRLLQAVRRCELVARLGGDEFVIVMENLGIDERGAALKAKS- 371
            +ND+MGH +GD LLK VA RL  AVR  + VARLGGDEF I++E +      A  KA + 
Sbjct: 1124 INDSMGHHIGDLLLKAVAHRLQNAVREGDTVARLGGDEFTIILEGV------AKTKAATL 1177

Query: 372  VGQKVRGLLNDPFMLAGKQLRTSPSIGIALFAEGRPGLEELLKQADVAMYQAKEAGKNAL 431
            + +KV      PF+L  K L  S SIGI+L+      ++ L+K AD AMY AK  G+N  
Sbjct: 1178 ISEKVLKAFQAPFLLDDKSLTISTSIGISLYPNDAEDVDSLIKFADTAMYHAKALGRNNF 1237

Query: 432  RFFDPAMQAAVEERVALENDLRNGVLENEFRLFCQPQVDAC---GRLCGGEVLIRWQHPV 488
            +F+   +       V LE  L+  +  NE  L  QP+   C   G L G E L+RW H  
Sbjct: 1238 QFYTNKLNEMATRHVQLEAGLKQAISRNELSLVYQPKF--CLRKGSLTGLEALLRWHHSE 1295

Query: 489  RGLVMPNQFIPLAEQTDLIIPIGEWVLRKTCETLVEWESHPSLAQISLSVNVSVNQVRDH 548
             G + P +FIPLAE+T +I  IG WV+   C+ L EW +      IS++VN+S  Q++  
Sbjct: 1296 LGPISPAEFIPLAEETGIINQIGHWVINHACQQLAEW-NELGFGDISMAVNLSARQLKA- 1353

Query: 549  NFVERVLAIIDDCGANPARIMLELTESLMAENVEEIILKMNALRVRGVRFSVDDFGTGYS 608
            + +  +   +   G     + LELTES++  N +E +  ++ L+  G+  +VDDFGTGYS
Sbjct: 1354 DIISTIEVALSVSGLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYS 1413

Query: 609  SLSYLKRFPLSELKIDQSFVREIALNQHDAVITEIIITLAKKLGLGVLAEGVETEDQLNF 668
            SLSYLKRFP+  LKID+ FVR+I  +  DA IT  II LA  L L V+AEGVET++QLNF
Sbjct: 1414 SLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNF 1473

Query: 669  LLAHDCSYFQGYLFGKPCAIE 689
            L    C   QG+L  KP + +
Sbjct: 1474 LALQGCDQVQGFLLSKPLSAQ 1494



 Score = 59.3 bits (142), Expect = 1e-12
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 8/129 (6%)

Query: 131 EEALKASEERLNLMLQGANDAAWDWDLRQHTVYYSPRWWQMIGREPDELEPTEDLWVKLL 190
           E +++ASEERL L L  + D  WDW++++  VY +          P     +  L     
Sbjct: 826 ETSIRASEERLKLALWASGDGMWDWNIQEQQVYRTHT------DIPVSQWSSHTLLHDNA 879

Query: 191 HPDDYQKVMDKMNGLFDRSGPSSFDTEFRLQTKSGSYLPVLCRG-VILRGADGTPLRMSG 249
           HP+D ++    +        P  F+ E+R++   G++L +L RG V+       P+RM+G
Sbjct: 880 HPEDRERFKQVLTDHLQGHTP-FFEMEYRIEHSPGNWLWILERGKVVETNNQEQPMRMTG 938

Query: 250 TNMDLTERK 258
           T  ++T RK
Sbjct: 939 TTRNITSRK 947



 Score = 27.7 bits (60), Expect = 0.004
 Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 10/131 (7%)

Query: 6    LFSDLIEYIPVGIVVHGPQSEILYANDRASEILGLSTAQMLGKVDIDPAWRFDFPDGTPM 65
            L S ++  +   +VV G    I   N   S I G S  Q+  K  I  A+     D    
Sbjct: 955  LSSQVLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSERQISDKYLIHLAYSRQQRD---- 1010

Query: 66   SLADYPVNRVLKCKEGVWGMILKVHRPVAKDV-AWVLCNAFPSIGEDGEVLQVITCFTDI 124
             L +    ++L+ K   W   + +     K +  W+  N    I   GE    +  FTDI
Sbjct: 1011 -LFNSIEQQLLRHKH--WAGEIWIRNRARKAILVWLEINQV--IDVKGETSHFVAVFTDI 1065

Query: 125  SALKHAEEALK 135
            +  K AEE L+
Sbjct: 1066 TERKKAEEDLR 1076