Pairwise Alignments

Query, 709 a.a., signal transduction protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 1009 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  351 bits (900), Expect = e-100
 Identities = 226/610 (37%), Positives = 331/610 (54%), Gaps = 27/610 (4%)

Query: 95   KDVAWVL-CNAFPSIGEDGEVLQVITCFTDISALKHAEEALKASEERLNLMLQGANDAAW 153
            +D+ W+L      S   +   L++   +TDI+  K  EE+LK S     L+   +++A  
Sbjct: 415  RDIRWILDTGKVVSRDANNNALRMCGTYTDITEAKLIEESLKLSA----LVYDNSSEAMS 470

Query: 154  DWDLRQHTVYYSPRWWQMIGREPDELEPTEDLWVKLLHPD-DYQKVMDKMNGLFDRSGPS 212
              D     +  +  +  + G    E+       ++LL+ D +      +MN      G  
Sbjct: 471  VLDETGVIITVNAAFTAITGYSESEIRGQH---IRLLYCDLNGHGFYTEMNNEIREKG-- 525

Query: 213  SFDTEFRLQTKSGSYLPVLCRGVILRGADGTPLRMSGTNMDLTERKESEARIYQLAYYDV 272
             +  E R + K+     +      ++  DG P R      D+T++K+SE  I++ A YD 
Sbjct: 526  EWQGEMRQRRKNNEEYVIWLTINTIKDKDGQPYRRVALFSDITDKKQSEHLIWKQANYDT 585

Query: 273  LTGLANRTLLMERLKAAIALCERSKQIGALLIIDLDNFKILNDTMGHDVGDALLKMVADR 332
            LTGL NR +L+E L A I   +R++   AL+ +DLD FK +NDT+GH +GD LL   A R
Sbjct: 586  LTGLPNRRMLLEYLGAEIKSADRNRNHFALMFLDLDYFKEVNDTLGHAMGDLLLIETASR 645

Query: 333  LLQAVRRCELVARLGGDEFVIVMENLGIDERGAALKAKSVGQKVRGLLNDPFMLAGKQLR 392
            L   VR  ++VARLGGDEF +V+ ++ +D +G    A+ + +++     +P++L  +   
Sbjct: 646  LKSCVRDADVVARLGGDEFTVVLSSM-VDHKGIERVAEHILRRIA----EPYVLGEETAY 700

Query: 393  TSPSIGIALFAEGRPGLEELLKQADVAMYQAKEAGKNALRFFDPAMQAAVEERVALENDL 452
             S SIGI L+ +    +E LLK AD AMY AK+ G+N   +F P+MQ   + R+ L  DL
Sbjct: 701  ISASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFTPSMQEYAKYRMRLIQDL 760

Query: 453  RNGVLENEFRLFCQPQVD-ACGRLCGGEVLIRWQHPVRGLVMPNQFIPLAEQTDLIIPIG 511
            R  V+  EF L  QP V    G +   E L+RW HP RG V P +FIP+AE T LI+ IG
Sbjct: 761  RQAVVSKEFELHYQPIVTMTTGEVLKAEALLRWFHPERGYVSPAEFIPVAEDTGLIVEIG 820

Query: 512  EWVLRKTCETLVEWESHPSLAQISLSVNVSVNQVRD-----HNFVERVLAIIDDCGANPA 566
             WV  +       W     +  I +SVN S  Q RD     HN++E +L  +D  G    
Sbjct: 821  NWVFEQAARQSALWRKTFGV-DIQISVNKSPIQFRDEGTLLHNWLE-LLQKLDVTGTG-- 876

Query: 567  RIMLELTESLMAENVEEIILKMNALRVRGVRFSVDDFGTGYSSLSYLKRFPLSELKIDQS 626
             + +E+TE L+ +    +  K+ A R  GV+ S+DDFGTGYSSL+YLK+F +  LKIDQS
Sbjct: 877  -VCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKFDIDYLKIDQS 935

Query: 627  FVREIALNQHDAVITEIIITLAKKLGLGVLAEGVETEDQLNFLLAHDCSYFQGYLFGKPC 686
            F R I  ++ D  + E II +A KLG+ V+AEGVETE Q   LL   C Y QGYLF KP 
Sbjct: 936  FTRNIDTDESDQTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLTAGCDYGQGYLFSKPV 995

Query: 687  AIELFASSFM 696
            +   FAS ++
Sbjct: 996  SATEFASKYL 1005



 Score = 70.5 bits (171), Expect = 4e-16
 Identities = 67/259 (25%), Positives = 116/259 (44%), Gaps = 16/259 (6%)

Query: 16  VGIVVHGPQSEILYANDRASEILGLSTAQMLGKVDIDPAWR-FDFPDGTPMSLADYPVNR 74
           +GI + G   + +  N R  ++L  S  ++L        W+    PD     +  + +  
Sbjct: 215 IGIAITGVDQKWIKVNPRLCQMLKYSEDELLHMT-----WKQLTHPDDVEADIVKFEL-- 267

Query: 75  VLKCKEGVWGMILKVHRPVAKDVAWVLCNAFPSIGE-DGEVLQVITCFTDISALKHAEEA 133
           +L  K   + M     R +AKD + V  +   +    + +VL VI  + D++A   A+  
Sbjct: 268 MLAGKIDNYEMD---KRFIAKDNSIVYTHMTVACKRANHQVLLVIAGYLDVTAQTLADRE 324

Query: 134 LKASEERLNLMLQGANDAAWDWDLRQHTVYYSPRWWQMIGREPDELEPTEDLWVKLLHPD 193
           + AS E+L L+L  ++   WDWD+R   +  + R   ++G + D L      W+  +  +
Sbjct: 325 VLASREQLELVLSSSDLGVWDWDIRNDHIERNARSADILGCDIDMLNANSRQWMDSIVAE 384

Query: 194 DYQKVMDKMNGLFDRSGPSSFDTEFRLQTKSGSYLPVLCRG-VILRGADGTPLRMSGTNM 252
           D  KV+  +     R        E+RL+T +     +L  G V+ R A+   LRM GT  
Sbjct: 385 DRPKVLHSIEAHI-RGETLQHKMEYRLKTLNRDIRWILDTGKVVSRDANNNALRMCGTYT 443

Query: 253 DLTERK--ESEARIYQLAY 269
           D+TE K  E   ++  L Y
Sbjct: 444 DITEAKLIEESLKLSALVY 462