Pairwise Alignments

Query, 912 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella amazonensis SB2B

Subject, 474 a.a., peptidase, M16 family from Phaeobacter inhibens DSM 17395

 Score =  143 bits (361), Expect = 2e-38
 Identities = 109/377 (28%), Positives = 187/377 (49%), Gaps = 33/377 (8%)

Query: 13  ATAMVLALCSLTP--------IQAFADLQKVTEVEG---ISEYRLDNGLKVLLFPDPTKE 61
           ATA+V AL +L          +Q+       T+ +    ++ + LDNG++V++  D    
Sbjct: 15  ATAVVAALVALDSADLAATGLVQSAQAQDAATQSDASDMVTSFVLDNGMQVVVIEDHRAP 74

Query: 62  TVTVNVTYKVGSKHENYGETGMAHLLEHLVFKGTPKHK--DIPAELSSHGARPNGTTWTD 119
            V   V Y+ GS  E  G++G+AH LEHL+FK T K    ++ A ++++G R N  T  D
Sbjct: 75  VVQHMVWYRAGSADEPVGQSGVAHFLEHLLFKATDKLAAGELSATVAANGGRDNAFTSYD 134

Query: 120 RTNYFETFAATEENIDWALSMESDRMVNSFIAKKDLDSEMTVVRNEF-ERGENSPFRITL 178
            T YF+  AA  + +   + MESDRMVN  + ++D+++E  V+  E  +R ++ P  +  
Sbjct: 135 YTAYFQRVAA--DRLGLMMQMESDRMVNIRLTEQDIETEREVILEERNQRTDSEPRALFR 192

Query: 179 QRMMASAFEWHNYGKSTIGARSDLENVSIERLQDFYRKYYQPDNATLIVAGKFAPEDMLK 238
           +++ A+ +  H YG+  IG R ++E + +     FY  YY P+NA L+V+G   PE++ +
Sbjct: 193 EQLNAAQYLNHRYGQPIIGWRHEMEELDMADALSFYGTYYAPNNAILVVSGDVDPEEVRR 252

Query: 239 KIEATFGNIPKPNRTIEPLYTVEPAQDGERQVTVRRVGDVQLLGTIYHVPP----GAHED 294
             + T+G IP      + + + EP Q   R++  +     Q      ++ P    GA E 
Sbjct: 253 LAQETYGQIPANPDLPDRVRSKEPPQTAARRIIFKDPRVAQPFVQRSYLAPERDNGAQER 312

Query: 295 YAAIDVLNEVLSATPNGRLHKSL---VEAKLASSVFGMNFQWQD--------PGVAIFMA 343
            AA+ +L E+L       L  +L    +  + + VF  +    D        PG  + + 
Sbjct: 313 AAALYLLAELLGGGSTSYLTNALQFDQQVAVYTGVFYSDVSLDDTTFDFLVVPGADVSLE 372

Query: 344 EMDKTADMDATQKALLD 360
           E +  A +DAT    L+
Sbjct: 373 EAE--AALDATFARFLE 387



 Score = 32.7 bits (73), Expect = 5e-05
 Identities = 77/402 (19%), Positives = 147/402 (36%), Gaps = 65/402 (16%)

Query: 465 LVKDYKGREQVAQGEAFDPSHTNIDSRTETLTLNSGTKVSLLQKKTRGESVVVRISGQFG 524
           LV+  + ++   Q +A D           +  L++G +V +++   R   V   +  + G
Sbjct: 35  LVQSAQAQDAATQSDASD--------MVTSFVLDNGMQVVVIEDH-RAPVVQHMVWYRAG 85

Query: 525 DLRSLSGKNAVGDAVGEMLLRGSSKYSREQIKEELDKLQASLRIGGSNGNLFASVETTRA 584
                 G++ V   +  +L + + K +  +       L A++   G   N F S + T  
Sbjct: 86  SADEPVGQSGVAHFLEHLLFKATDKLAAGE-------LSATVAANGGRDNAFTSYDYTAY 138

Query: 585 -------NLLPVLDIVTDVLRNPSFPEKEFELYKTETKVAIEQNLQDPQSLAFNAYSRHQ 637
                   L  ++ + +D + N    E++ E   TE +V +E+  Q   S     +    
Sbjct: 139 FQRVAADRLGLMMQMESDRMVNIRLTEQDIE---TEREVILEERNQRTDSEPRALFREQL 195

Query: 638 SPYGKDDPRYVGTFEEQLAELDKLTLKQVKRYHGDFYNAKQMQVSIIGDFDKD------- 690
           +     + RY         E+++L +     ++G +Y      + + GD D +       
Sbjct: 196 NAAQYLNHRYGQPIIGWRHEMEELDMADALSFYGTYYAPNNAILVVSGDVDPEEVRRLAQ 255

Query: 691 ---ATVSALDTLTKGWKSKQTYQ-----------RIASPYVKLDASPITFNTPDKENATF 736
                + A   L    +SK+  Q           R+A P+V+      ++  P+++N   
Sbjct: 256 ETYGQIPANPDLPDRVRSKEPPQTAARRIIFKDPRVAQPFVQR-----SYLAPERDNGA- 309

Query: 737 VASLSLPVGDMDADAPALTLGNYILGGGFLSSRLATRLRQKDGLSYGAGSFLRLSSEDQR 796
                         A AL L   +LGGG  +S L   L+    ++   G F    S D  
Sbjct: 310 -----------QERAAALYLLAELLGGG-STSYLTNALQFDQQVAVYTGVFYSDVSLDDT 357

Query: 797 GSLGAYAICAPQNLAKVELGFREEIARLLKDGFTADEVEAAK 838
                    A  +L + E       AR L++G    ++E  K
Sbjct: 358 TFDFLVVPGADVSLEEAEAALDATFARFLEEGVDEAQLERIK 399